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2 results for “Lumbriculus variegatus”
Assemblies and annotation products of a transcriptome of regenerating and non-regenerating Lumbriculus variegatus worms
<p>These are the assemblies and annotation products of a transcriptome assembled from regenerating and non-regenerating tissues of the California blackworm <em>Lumbriculus variegatus</em>. The assembly and annotation strategies are described in the article <strong>Transcriptome analysis during early regeneration of <em>Lumbriculus variegatus</em></strong>, published in Gene Reports (https://doi.org/10.1016/j.genrep.2021.101050).</p> <p>blastp.outfmt6: homology results from BLASTp (v2.10.0) of the predicted proteins</p> <p>blastx.outfmt6: homology results from BLASTx (v2.10.0) of the assembled transcripts</p> <p>LV_transcriptome.fasta: assembled transcriptome after duplicated sequences were filtered out with CD-HIT-EST (v4.7)</p> <p>LV_transcriptome.fasta.transdecoder.cds: coding sequences identified with TransDecoder (v5.5.0)</p> <p>LV_transcriptome.fasta.transdecoder.gff3: positional annotation of the ORFs identified with TransDecoder (v5.5.0)</p> <p>LV_transcriptome.fasta.transdecoder.pep: predicted proteins identified with TransDecoder (v5.5.0)</p> <p>LV_transcriptome_non_filtered.fasta: transcriptome assembled with Trinity (Galaxy v0.0.1)</p> <p>signalp.out: signal peptide predictions from signalP (v4.1)</p> <p>tmhmm.out: transmembrane domains predictions from tmHMM (v2.0)</p> <p>TrinotatePFAM.out: protein domains predictions from HMMER (v3.3)</p>
Positive and negative frequency dependent parasitism in naturally co-occurring lineages of diploid sexual and polyploid asexual Lumbriculus variegatus
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