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ShareScore release 0.9.0
Dataset results
2 results for “Manuscript fragments”
Data set associated to the manuscript entitled Carbon emissions from inland waters may be underestimated: evidence from European river networks fragmented by drying by López-Rojo et. al
<p>CO2 and CH4 emissions and several associated environmental variables were taken in 6 European drying river networks, in 20 river reaches per river network. The field work was carried across 3 sampling campaigns in 2021, coinciding with 3 hydrological seasons (pre-dry, dry and post-rewetting) to encompass most of the hydrological variability. Each time, measures were taken in the habitats available (flowing water, dry riverbeds, isolated pools).</p>
Dataset associated with the manuscript titled "Capturing non-local through-bond effects when fragmenting molecules for quantum chemical torsion scans"
<p>The dataset is a part of the supporting information of the <a href="https://chayast.github.io/frag-manuscript/#fragmentation-schemes-can-be-assessed-by-their-ability-to-preserve-the-chemical-environment-while-minimizing-fragment-size">fragmenter manuscript</a>, which also describes how this dataset was generated in more detail.</p> <p>This dataset includes all fragments generated from 730 FDA approved molecule without fragmenting rings.</p> <p>Scripts used to generate this set live <a href="https://github.com/choderalab/fragmenter_data/tree/master/combinatorial_fragmentation">here</a>.</p> <p>1. Filter DrugBank with the following criteria:<br> 1. FDA approved<br> 2. Largest ring size has less than 14 heavy atoms<br> 3. Smallest ring size has at least 3 heavy atoms<br> 4. Molecule has less than 10 rotatable bonds<br> 5. Molecule must have at least one aromatic ring<br> 6. Molecule has only one connected component<br> 2. Enumerate tautomers at physiological pH (this step generated 1243 molecules)<br> 3. Exhaustive fragmentation without fragmenting rings (~300,000 fragments)<br> 4. Generate conformations for each fragment using Omega<br> 5. Calculate AM1 WBO for each conformation </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.