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266 results for “Michigan”
The influence of boating noise on the parental care behaviors of smallmouth bass (Micropterus dolomieu) during the summer of 2024 at Douglas Lake, Michigan, USA.
Anthropogenic noise is on the increase and in aquatic systems one of the major sources of noise is boat traffic. For organisms in lakes, rivers, and oceans that are capable of hearing, anthropogenic noise may alter behavior in a number of different ways. Here we did a combination of field and experimental work by locating smallmouth bass nests that were actively being guarded by males. Using an underwater drone, we monitored nest guarding behavior before and after a boat ran by the nest. In addition, we monitored behavior during this period while simultaneously recording boat motor noise. The results showed that the sequence of behavior performed by bass was altered during and after the boat ran by the nest.
Data from the Forest Resilience Threshold Experiment, University of Michigan Biological Station, 2024
During the 2024 field season, data collection efforts led by the FoRTE crew centered on understanding forest ecosystem dynamics and carbon cycling processes in a temperate forest landscape. Comprehensive datasets were gathered to evaluate structural and functional responses across multiple forest strata. Measurements included diameter at breast height (DBH) for canopy, subcanopy, and seedling layers, alongside a detailed subcanopy census to assess understory composition and diversity. Soil respiration (Rs) was monitored to quantify carbon fluxes, while fern density and distribution were documented to explore their role in forest microclimates and nutrient cycling. Photosynthetically active radiation (PAR) readings provided insights into light availability and its impact on primary production. Advanced remote sensing tools, including LiDAR and normalized difference vegetation index (NDVI), were employed to characterize canopy structure, vegetation health, and spatial heterogeneity. These diverse datasets collectively contribute to a robust framework for analyzing forest resilience, recovery, and carbon sequestration potential following disturbance, advancing our understanding of ecosystem processes in the face of environmental change.
Avian sound propagation in three Michigan Forests, 2022
In three forest types, dry-mesic northern forest, rich conifer swamp, and boreal forest, we recorded pure tones within songbirds’ auditory range (2 to 8 KHz) at 6 different distances along a transect and quantified different aspects of the vegetation through which the pure tones traveled. Four transects per forest type were used and sounds were recorded at two different heights (1 and 5 m). Linear regression analysis was used to determine if the pure tones were attenuated differently along transects, between sampling heights, and across forest types.
Landscape of fear and safety summer 2025 data from University of Michigan Biological Station stream research facilities
Predator prey interactions are often driven by sensory cues and these cues play a role in non-consumptive effects. We are interested in the role that chemical cues (from predators) play in resource use by one of fish common prey, crayfish. We created flow through mesocosms and populated them with crayfish and various configurations of shelters and food. Then we presented to the crayfish predator cues (from large mouth bass) and measured behavioral responses from midnight to 4 am.
Bird and forest communities in a northern Michigan jack pine stand before and after logging, 2013-2018
This package contains data associated with documentation of breeding-season bird communities in a dry, jack pine and mixed red pine-jack pine forest in Marquette Co., MI. In addition to repeated surveys, 2014-2018, of bird presence in a network of 45 study plots, the package includes vegetation data collected on the same plots 2013-2017. At initiation of the study, the stand was >100 years old and had experienced little or no active management. During the study period, stands were thinned to reduce fire risk, and most jack pine were cut; three plots fell in a control area with no logging. Bird communities and vegetation were sampled repeatedly before and after management activities. Subsequent to the study period, a managed burn affected much of the study area.
The impact of the presence of the crayfish Faxonius virilis on the excavating behavior of Faxonius propinquus, Michigan, 2025
Faxonius propinquus are native crayfish to the Upper Midwest. They are burrowing crayfish that work the sediment and make small burrows with numerous openings. These crayfish are imperiled by Faxonius virilis which overlap in niche structure. We were interested in the impact of the chemical cues emanating from F. virilis on the sediment and burrowing nature of F. propinquus. We conducted a study at the University of Michigan's Biological Station using F. propinquus caught in nearby Douglas Lake. In addition, we collected marl substrate from where these animals are found. We created flow through mesocosms and placed F. propinquus in the mesocosm with marl substrate. Then upstream of this, we placed a F. virilis in a flow through container to allow chemical cues from F. virilis to reach F. propinquus. We did a 48 hour study where 24 hours were with a competitor chemical cue and 24 were without. This 48 cycle was repeated to provide discrete 48 hour replicates. We monitored sediment working behavior at night and during the day.
Nutrient Loading and Benthic Macroinvertebrate Assessments in Michigan Streams (2002-2021)
The assembled data package, including both nutrients and benthic macroinvertebrate assessments from stream monitoring sites in Michigan (USA), is part of the project entitled "Long-Term Nitrogen and Phosphorus Dynamics and Macroinvertebrate Assemblages in Temperate Streams." These datasets encompass records from January 1, 2002, until December 31, 2021, that were extracted from the Water Quality Portal (www.waterquality.us). We were aiming to examine the influence of landscape settings on the concentration of N and P constituents in streams and rivers, and determine the effects of land use on benthic macroinvertebrates in the interaction with these nutrients over 20 years. Records were cleaned and analyzed to determine the influence of land use settings on nutrient concentrations and benthic macroinvertebrate composition statewide. All data tables feature monitoring sites with sampling dates, identifiers, and GPS coordinates.
Forest tree, woody debris, root ingrowth, soil respiration and characterization data from long-term research plots for LTREB at the University of Michigan Biological Station
The NSF-funded project "LTREB: Drivers of temperate forest carbon storage from canopy closure through successional time" (2014-2024) supports research to meet the following goals: 1) elucidate mechanisms responsible for changes in C storage over decades to centuries; 2) link processes leading to persistence and resilience of forest C storage following disturbance; 3) quantify the effects of potential drivers such as forest structure, N availability, climate change, and atmospheric deposition on decadal and longer-term trajectories of C storage. Field activities for this research are conducted at the University of Michigan Biological Station (UMBS) on a pair of chronosequences and several old reference forests. Synthesis activities utilize data collected from these field sites in support of the LTREB project, as well as data synthesized from other sources (e.g., long-term UMBS plot data, AmeriFlux data, FIA data) all intended to address the core questions of the LTREB project. This dataset has been compiled and expanded over a series of versions, with new data types and observations appended periodically. Presently, the dataset includes observations from tree inventory censuses, woody debris sampling, fine root ingrowth cores, soil respiration measurements, and two sets of soil collections aimed at quantifying a range of physical, chemical, and biological properties of soil.
White Cedar Ring Width Data from Michigan Upper Peninsula, 1869-2022
This project used tree cores to reconstruct growth over time and correlate that with climate variables including maximum monthly temperature, monthly precipitation, and vapor pressure deficit.
US_UMB and US_UMd Ameriflux towers biometric plot data at the University of Michigan Biological Station, Pellston, MI (1997 to 2024)
These are the annual leaf litterfall carbon fluxes and average soil respiration measurements for the two flux towers (reference, aka 'AmeriFlux' and treatment, aka 'FASET') at UMBS.
Landscape Ecosystem Classification Soils and Vegetation Plots Data at the University of Michigan Biological Station, Pellston, Michigan from 1987 to 2015 remeasurements
Landscape ecosystems are a means of understanding the spatial patterns of and the functional interrelationships in forest ecosystems. Landscape ecosystem research is a multifactor, holistic approach to identifying, classifying, describing, and mapping terrain ecosystems. Abiotic and biotic factors are integrated in the field to distinguish repeating units similar in ecological structure and function. Landscape ecosystems are identified by simultaneous integration of physiographic, soil, and vegetation information. The more stable components--physiography and soil--largely determine local climate, and water and nutrient relations, and thus the interrelationships of physiography and soil form the foundation of a landscape ecosystem classification. Vegetation is seen as a phytometer that integrates the many abiotic factors and their interactions, and therefore reflects differences in ecosystem structure and function. When the three main ecosystem factors are analyzed simultaneously, one can perceive interrelationships that result in ecologically meaningful differences among segments of the ecosphere. Landscape ecosystems are spatial; they are volumetric, multi-dimensional segments of earth, whose components include soil, water, atmosphere, solar radiation, and biota. These segments can be identified, classified, described, and mapped at various scales. From the years of 1988 to 2001, various graduate students of Burton V. Barnes completed their masters thesis and dissertations in this pursuit. The attached data set is a culmination of these individual work. Each plot has measurements at various scales within the 10 by 30 meet plot. A stratified random design was used to locate plot locations. The random design was stratified by major and minor landforms in the region. All trees within the plot where identified and dbh was measured. All individual shrubs where identified and abundance was counted within the entire plot. Soils pits locations for each plot where selected
Michigan Opossum Distribution from 1899 to 2008
This data set documents the expansion of the distribution of opossums in Michigan. Each row in the data file consists of a specimen record or observation and includes the year and location (latitude/longitude) of the record.
warmXtrophic: plant community responses to the individual and interactive effects of climate warming and herbivory across multiple years at Kellogg Biological Station Long-Term Ecological Research Sites (KBS LTER), Michigan, USA, and University of Michigan Biological Station (UMBS), Michigan, USA.
Climate change has both direct and indirect effects on ecological communities. Whereas most climate change ecology experiments manipulate abiotic drivers to measure direct effects of climate on species or communities, fewer quantify the indirect effects through biotic interactions, especially over multiple sites and years. In this factorial experiment we manipulate temperature through open-top chambers, and the level of insect herbivory through insecticide. At two early successional field sites separated by 3 degrees of latitude and 3°C of mean annual temperature (University of Michigan Biological Station, Pellston, MI and Kellogg Biological Station, Hickory Corners, MI), 6 replicate 1-m2 plots per treatment were installed in May 2015. 12 plots per site are at ambient temperature, 12 are warmed with year-round non-UV filtering polycarbonate and wood frame construction OTCs for tall-stature plants (Welshofer et al. 2018 MEE). Insecticide reduces insect herbivory in half the plots (Welshofer et al. 2018 Oecologia). Over the course of the experiment, OTCs warmed the plant communities by 1.9°C-3.0°C on average over the growing season. Each year, through 2021, plant traits and community responses were measured at the species level: plant phenology (green-up, flowering, flowering duration, seed set); plant percent cover (aerial % cover of the 1m2 plot); plant traits (specific leaf area, C and N content), herbivory damage to leaves, and plant species biomass (only in 2021). Further methodological details are found within each response variable metadata. This experiment is ongoing and further data package updates are planned. L0 data is available upon request. R scripts can be found here: https://github.com/SpaCE-Lab-MSU/warmXtrophic. The biotic and abiotic community context and relative strengths of direct vs. indirect effects may yield ecological surprises under climate change unless addressed together. Large-scale experiments like this one can improve our ability to unde
Water chemistry and aquatic vegetation data from Les Cheneaux Islands, Northern Lake Huron, Michigan, USA, 2016-2018
Remote sensing approaches that could identify species of submerged aquatic vegetation (SAV) and measure their extent in lake littoral zones would greatly enhance their study and management, especially if they can provide faster or more accurate results than traditional field methods. Remote sensing with multispectral sensors can provide this capability, but SAV identification with this technology must address the challenges of light extinction in aquatic environments where chlorophyll, dissolved organic carbon, and suspended minerals can affect water clarity and the strength of the sensed light signal. Here, we present environmental data collected to support a study using an unmanned aerial system (UAS)-enabled methodology to identify the extent of the invasive SAV species Myriophyllum spicatum (Eurasian watermilfoil, or EWM) in the Les Cheneaux Islands area of northwestern Lake Huron, Michigan, USA. Data collected includes water chemistry (nitrogen, phosphorus, carbon, suspended solids, chlorophyll a), light profiles, and submerged aquatic vegetation characteristics including cover, species dominance using aquatic vegetation survey methods (AVAS), and biomass.
Water chemistry data from synoptic sampling of 235 Lake Michigan tributaries: 10-15 July, 2018
This dataset includes nutrient (total nitrogen and phosphorus, soluble reactive phosphorus, and dissolved inorganic nitrogen [nitrate+nitrite+ammonium]) and chloride concentrations for 235 tributaries of Lake Michigan collected during a synoptic sampling event from 10-15 July, 2018. The dataset also includes modeled discharge metrics for the 235 sampled watersheds, as well as spatial watershed characteristics.
Tree recruitment from sites across Southern Michigan including the University of Michigan Biological Station, Pellston, MI (2022)
As a result of current climate change, flooding events are becoming more frequent and lasting longer, resulting in temporal floods in areas that have not historically experienced this disturbance. One critical aspect of forest dynamics that could be significantly impacted by increasing flooding is tree species recruitment. While adult trees may be able to survive temporary flooding, establishing seedlings with shallow root systems may not. A single flooding event could jeopardize decades of recruitment if seedlings are unable to survive the anaerobic conditions imposed by higher water levels. Despite the potential impact of flooding on forest dynamics, there is little information on seedling recruitment patterns after exposure to flooding. To understand how flooding conditions could possibly be impacting forest recruitment, we conducted a field observational study across seven temperate forests. We gathered data on seedling abundance and diversity in areas with signs of recent flooding, as well as in nearby control (dry) areas. Our results document the adverse effects flooding conditions have on temperate forest recruitment dynamics, providing insights into how tree recruitment might be impacted by shifts in flooding patterns.
Understory plant community data from repeated plot sampling (1978-2019) in old-growth northern hardwood forest, northern Michigan (Dukes RNA, Hiawatha National Forest)
This data-set includes long-term, permanent-plot-based data for understory plant communities in old-growth mixed northern hardwood-hemlock forest and forested peatland in the Upper Great Lakes region. Data for over 900 understory quadrats (all associated with long-term canopy data from larger permanent plots) included multiple (2-5) remeasurements over 23-40 years, with longest periods and most remeasurements for upland forest types. The Dukes Research Natural Area (RNA) (https://www.fs.usda.gov/research/nrs/rnas/locations/dukes) in the Hiawatha National Forest (Marquette Co., MI) includes ca. 100 ha of largely unlogged, original forest. Publications cited below include more detailed information about the site. About half of the RNA supports upland forests intergrading from hemlock (Tsuga candensis) dominance to mixtures of hemlock and northern hardwoods species. Sugar maple (Acer saccharum) is dominant over much of the upland area, with, locally, significant admixtures of beech (Fagus grandifolia), yellow birch (Betula alleghaniensis), and red maple (Acer rubrum). Topographic relief is very slight with total elevational change within the RNA only about 10 m. The stand is within a few km of the western limit of the continuous range of beech. In 1935, 248 continuing forest inventory (CFI) plots (circular, 0.2 acre) were established on a regular grid throughout the RNA, and these have been the subject of repeated sampling through 2018-2019 and support continuing long-term study addressing canopy tree communities (canopy data to be deposited in a separate project). Examples of resulting publications are cited elsewhere in metadata, and can provide more detailed information about the RNA. In 1978-80, U.S. Forest Service researchers, directed by Jan Schultz and Frederick Metzger, initiated studies of understory communities, including herbaceous species and woody seedlings. Data were derived from four sub-quadrats within each of the CFI plots. These quadrats were re-estab
Long-term (1962-2019) tree demography on permanent plots in old-growth northern hardwood forests of the Huron Mountains, Marquette Co., Michigan.
This package contains tree demographic data from multiple remeasurements of several sets of permanent study plots in old-growth hemlock-northern hardwood forests in northern Marquette Co., Michigan. Plots were established from 1962-2001, with five to nine censuses over the study period. Plots are distributed over a large and diverse area of old-growth forests protected since ca. 1880, with no commercial management and active management limited to maintenance of trails and tracks. Most plots have not experienced stand-originating disturbances for at least 400 years (based on increment cores); three plots are in stands originating following a fire ca. 1830 ("Bourdo plots" 7094-7096). Forests are dominated by sugar maple (Acer saccharum) and eastern hemlock (Tsuga canadensis); secondary species include yellow birch (Betula alleghaniensis), basswood (Tilia americana), and hop-hornbeam (Ostrya virginiana). Soils are variable, ranging from deep sandy outwash to thin layers of rocky till over bedrock. Mortality and diameter growth of all trees were recorded at each remeasurement. Protocols for measurement and stem-mapping are described in Methods. Several publications use some of the data included in this package -- see 'journal citations'. (identified as Kalkaska series) are developed on deep sandy glacial outwash. The plot is within a much larger region of old-growth forest, protected since ca. 1880, with only minimal disturbance associated with access tracks and trails. Numerous other forest community and dendrochronological studies support the interpretation that the area around the study plot has not experienced stand-initiating disturbance for at least 400 years. Initial mapping and measurements (1993-1995 for 2.52 ha; an additional 0.2 ha added in 1999) used a 20x20 m grid established in a near-level area of uniform substrate. All stems were identified to species, mapped on polar coordinates from the center of each grid cell (including, at first measurement, identif
Plot-based vegetation data for a large tract of old--growth hemlock-northern hardwood forest, Marquette Co., Michigan: 1988
In 1987-88 members of the Burton V. Barnes lab at University of Michigan conducted a landscape inventory of portions of the Huron Mountain Club lands (primarily, the self-declared 'Reserved Area') in Powell Township, northern Marquette County, MI. The data-set deposited here, collect under direction of Philip E. Stuart (then a graduate student in the lab) focuses on the ca. 1200 ha of old-growth, mesic hemlock-northern hardwood forests within the larger property. 313 plots (450 m^2) were established at nodes of an approximately 10 chain (~192 m) grid that fell within these forest types. The data-set includes canopy tree measurements, ground-layer cover estimates (for a subpplot), and a number of soil and topographic variables (measured directly and derived). A description of the study and results is published in Simpson et al. 1990. Occasional Papers of the Huron Mountain Wildlife Foundation Number 4, with associated maps.
Sonde Data (2010-2014) from the Salmon Trout River in the Huron Mountains, Marquette Co., Michigan.
This dataset includes readings from a multi-parameter water quality sonde to continuously monitor chemical and biological conditions (water temperature, conductivity, dissolved oxygen, pH, turbidity) on the Salmon Trout River in Marquette, MI. This sensor was deployed May-Nov 2010, 2011, 2012, 2013 and 2014. This dataset includes cleaned raw data obtained with the sonde and may include time periods when readings were affected by sand accumulation/burial of the sensors.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.