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ShareScore release 0.9.0
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50 results for “Microbial Metabolites”
16S And WGS Feature Tables: Tryptophan Metabolites And Their Predicted Microbial Sources In Fecal Samples Of Healthy Individuals
<p>The zip file contains 16S and WGS feature tables used in the following publication:</p> <p>Tryptophan Metabolites And Their Predicted Microbial Sources In Fecal Samples Of Healthy Individuals<br>Cynthia L. Chappell, Kristi L. Hoffman, Philip L. Lorenzi, Lin Tan, Joseph F. Petrosino, Richard A. Gibbs, Donna M. Muzny, Harsha Doddapaneni, Matthew C. Ross, Vipin K. Menon, Anil Surathu, Sara J. Javornik Cregeen, Anaid G. Reyes, Pablo C. Okhuysen bioRxiv 2023.12.20.572622; doi: https://doi.org/10.1101/2023.12.20.572622</p>
Dataset - COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions
<p>Generated draft and consensus reconstructions for the manuscript "COMMIT: Consideration of metabolite leakage and community composition improves microbial community reconstructions" (Wendering & Nikoloski).</p>
Genetic disruption of synthesis pathways of Arabidopsis secondary metabolites dramatically affects root-associated nematode populations directly and via modulation of microbial communities
<p>Dataset of nematode, fungal and bacterial sequence reads of Arabidopsis roots. Dataset of fungal and bacterial sequence reads of Arabidopsis microbial suspension. DNA concentration of Arabidopsis root microbial suspension. Meloidogyne incognita J2 invasion into tomato roots. qPCR dataset of Meloidogyne hapla infection pressure into Arabidopsis roots. </p>
Rational Modification of Human Gut Microbial Metabolites by Dietary Resistant Starch in Patients After Allogeneic Hematopoietic Stem Cell Transplantation: A Prospective Feasibility Study
<p>We conducted a prospective longitudinal feasibility study in patients undergoing allo-HCT for hematological malignancies to test the hypothesis that defined and consistent administration of resistant starch will rationally modify intestinal microbiota dependent metabolites, particularly the short chain fatty acids (SCFA), such as butyrate. Ten adults undergoing human leukocyte antigen-matched, related-donor myeloablative allo-HCT were enrolled and received resistant potato starch (RPS) daily from day -7 to day 100 after allo-HCT. </p>
Gut microbial metabolites reveal diet-dependent metabolic changes induced by nicotine administration
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Analysis of MicroBial Metabolites After Eating Refined Food
ClinicalTrials.gov study NCT04308473. IPD Sharing: NO. Countries: 1. Publications: 7.
Gut Microbial Metabolites Inosine Combined With PD-1/PD-L1 Inhibitor for Patients With Malignant Advanced Solid Tumors
ClinicalTrials.gov study NCT05809336. IPD Sharing: Not stated. Countries: 1. Publications: 1.
AXOS and Microbial Metabolites in CKD
ClinicalTrials.gov study NCT02141815. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Data from: Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities
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Fig. 1 in Microbial transformation of some simple isoquinoline and benzylisoquinoline alkaloids and in vitro studies of their metabolites
Fig. 1. (A–E): Structure of isoquinoline alkaloid substrates and their metabolites.
Data from: Microbial ‘gardening’ by a seaweed holobiont: surface metabolites attract protective and deter pathogenic epibacterial settlement
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Data from: Microbial metabolites elicit distinct olfactory and gustatory preferences in bumble bees
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A gut microbial metabolite of dietary polyphenols reverses obesity-driven hepatic steatosis
GEO Series GSE188967. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Aromatic Microbial Metabolite Hippuric Acid Potentiates Pro-Inflammatory Responses in Macrophages through TLR-MyD88 Signaling and Lipid Remodeling
GEO Series GSE307919. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
The microbial tryptophan metabolite indole acts on the gastrointestinal tract to improve glucose homeostasis by enhancing GLP-1 secretion and L-cell differentiation
GEO Series GSE306720. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Microbial Bile Acid Metabolites regulate Central Nervous System autoimmunity
GEO Series GSE233771. Homo sapiens. 40 samples. Type: Other.
Microbial metabolite ammonia disrupts CEACAM1-TGF-β signaling to promote colon cancer
GEO Series GSE281613. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Microbial metabolite drives ageing-related clonal haematopoiesis via ALPK1 [RNA-seq]
GEO Series GSE232794. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Albugo-imposed immunosuppression by compromised salicylate-triggered immunity and altered tryptophan-derived anti-microbial metabolite biosynthesis and bioavailability
GEO Series GSE75016. Arabidopsis thaliana. 111 samples. Type: Expression profiling by high throughput sequencing.
Determining effects of microbial metabolite, Urolithin A on colon epithelial cells
GEO Series GSE113581. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.