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575 results for “Modeling Codes”
Code for Random Forest models that predict pharmaceutical and water chemistry measurements in Baltimore Ecosystem Study streams
This file contains code to model the relationship between the water chemistry measurements and discharge measured as part of BES routine sampling and the pharmaceuticals measured in WY 2018. We use Random Forest models to predict 1) total (i.e., summed) concentration of the pharmaceuticals for which we screened, 2) total nutrient concentrations (TN & TP), 3) whether or not the antibiotic trimethoprim was detected in a given sample, and 4) whether or not nitrate and TP were above or below environmentally-relevant threshold concentrations. We also use RF models to predict N and P concentrations over a longer period, in order to compare models for nutrients to pharma. Code and analyses here rely on data processed in the file "BESPharma_WY2018.Rmd", published on EDI (doi:10.6073/pasta/610cb67fcbc8982c2af8ed946dce8ea5) and BES water chemistry data published on EDI (doi:10.6073/pasta/ce7f30e6013e003bfe28c5fd7d4aed23 )
The dataset and model code pertinent to the Everglades Peat Elevation Model (EvPEM): The salinity and inundation mesocosm experiment in freshwater and brackish water sawgrass wetlands in Florida Coastal Everglades (2015-2017).
This is an assembled data and Everglades Peat Elevation Model (EvPEMv1.0) Stella code used to estimate and simulate net ecosystem carbon balance (NECB) and peat elevation change in response to saltwater intrusion and level of inundations. Data from several studies were combined for the estimation of NECB, model parameterization, and calibration (Wilson, 2018; Wilson et al., 2018, 2019; Charles et al., 2019; Servais et al., 2020). The reported data includes aboveground net primary productivity (ANPP), belowground net primary productivity (BNPP), peat elevation change, and decomposition rates that were collected from outdoor laboratory mesocosm experiments conducted at the Florida Bay Interagency Science Center in Key Largo, Florida during 2015-17. The plant-soil monoliths were obtained from a freshwater peat and a brackish water peat marsh located within the Florida Coastal Everglades and transported to the Key Largo facility for the experimental manipulations. In experiments focused on the brackish water marsh, three experiments were carried out reflecting the combined effect of salinity, inundation, and peat exposure to air. The brackish water experiments characterized submerged (SUB), exposed (EXP), and extended depth of exposure of peat surface (EXTEXP) conditions, as we varied water depth relative to the peat surface. Each experiment was subjected to two salinity manipulations: (1) ambient (~10 ppt) porewater salinity (AMB) and (2) elevated (~20 ppt) salinity (SALT). The experimental design included six (2 X 3) treatments: (1) submerged ambient salinity (AMB.SUB), (2) submerged elevated salinity (SALT.SUB.), (3) exposed ambient salinity (AMB.EXP), (4) exposed elevated salinity (SALT.EXP), (5) exposed with extended exposure/dry-down ambient salinity (AMB.EXTEXP), and (6) exposed with extended exposure/dry-down elevated salinity (SALT.EXTEXP). The water level was kept 4 cm above the peat surface for the brackish water SUB treatments. Exposure for the EXP treatment
Modified WRF/Chem source code, output data, and post-processing scripts for the GMD manuscript "Evaluation of WRF/Chem model (v3.9.1.1) real-time air quality forecasts over the Eastern Mediterranean"
<p>Here you will find the modified WRF/Chem code used in the simulations, the scripts used for post-processing and the model output data used in the manuscript. </p> <p>Two modifications have been made in module_aerosols_soa_vbs.F:</p> <ol> <li>ch_dust is set to1.0D-9*0.36</li> <li>The model is set not to initialize during restarts</li> </ol> <p>The model data directory includes:</p> <ol> <li>Two csv files (Winter and Summer) with the hourly concentrations of atmospheric pollutants at the locations of the ground stations. These data were used to produce Figures 4-8 in the manuscript as well as all the metrics.</li> <li>Two netcdf files (Winter and Summer) with the average ground concentrations of atmospheric pollutants over Cyprus. These data were use to produce Figure 3 in the manuscript. </li> </ol>
Data, Analytical Code, and Model Outputs From: Restoration Treatments Enhance Tree Growth and Alter Climatic Constraints During Extreme Drought
<p>This archive includes data (forest inventories, tree ring measurements, climate variables), statistical code, model outputs, and a preprint copy of Rodman et al. (2024). For more information on specific information, processing methods, and data formats, see "README.md" or "README.html" files associated with this archive</p>
Gaussian Process Model and Sensor Placement for Detroit Green Infrastructure: Datasets and Code
<ol> <li><strong>code.zip: </strong>Zip folder containing a folder titled "code" which holds: <ol> <li>csv file titled "MonitoredRainGardens.csv" containing the 14 monitored green infrastructure (GI) sites with their design and physiographic features;</li> <li>csv file titled "storm_constants.csv" which contain the computed decay constants for every storm in every GI during the measurement period;</li> <li>csv file titled "newGIsites_AllData.csv" which contain the other 130 GI sites in Detroit and their design and physiographic features;</li> <li>csv file titled "Detroit_Data_MeanDesignFeatures.csv" which contain the design and physiographic features for all of Detroit;</li> <li>Jupyter notebook titled "GI_GP_SensorPlacement.ipynb" which provides the code for training the GP models and displaying the sensor placement results;</li> <li>a folder titled "MATLAB" which contains the following: <ol> <li>folder titled "SFO" which contains the SFO toolbox for the sensor placement work</li> <li>file titled "sensor_placement.mlx" that contains the code for the sensor placement work</li> <li>several .mat files created in Python for importing into Matlab for the sensor placement work: "constants_sigma.mat", "constants_coords.mat", "GInew_sigma.mat", "GInew_coords.mat", and "R1_sensor.mat" through "R6_sensor.mat"</li> <li>several .mat files created in Matalb for importing into Python for visualizing the results: "MI_DETselectedGI.mat" and "DETselectedGI.mat"</li> </ol> </li> </ol> </li> </ol>
Nabro 3D velocity model produced by the FMTOMO code
<p>These files relate to "Seismic tomography of Nabro caldera, Eritrea: insights into the magmatic and hydrothermal systems of a recently erupted volcano" by Gauntlett et al., 2023. </p> <p>Original seismic waveforms are from the Nabro Urgency Array (Hammond et al., 2011; <a href="https://doi.org/10.7914/SN/4H_2011">https://doi.org/10.7914/SN/4H_2011</a>), which is publicly available through IRIS Data Services (<a href="http://service.iris.edu/fdsnws/dataselect/1/">http://service.iris.edu/fdsnws/dataselect/1/</a>). See Hammond et al. (<a href="https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2021JB021910#jgrb55017-bib-0025">2011</a>) for further details on waveform data access and availability. Sources were originally located by Lapins et al. (<a href="https://doi.org/10.1029/2021JB021910">2021</a>), and the full catalogue is archived <a href="https://zenodo.org/record/7669717#.ZAXtfuymP0s">here</a> (Lapins, 2022). </p> <p>The FMTOMO package is freely available to download at<a href="http://rses.anu.edu.au/~nick/fmtomo.html"> http://rses.anu.edu.au/~nick/fmtomo.html</a>. </p> <p>This repository contains three 3D velocity models:</p> <ol> <li>vp_model.out</li> <li>vs_model.out</li> <li>vpvs_model.out</li> </ol> <p>These plain text files comprise the output of the FMTOMO tomography algorithm, which inverts for 3D P-wave velocity and S-wave velocity Vp and Vs) structure and Vp/Vs ratio for a grid centred around Nabro volcano. The velocity is given in km/s for Vp and Vs, and the values are dimensionless for Vp/Vs ratio.</p> <p>The grid is specified in the first four lines of the file:</p> <ul> <li>Line 1: for these data, this line will always hold the values `1' and `1'. </li> <li>Line 2: the number of grid nodes in radius (depth), latitude and longitude. </li> <li>Line 3: the radial (depth) node spacing in km, latitude spacing in radians, longitude spacing in radians.</li> <li>Line 4: the grid origin radius (km), latitude (radians) and longitude (radians).</li> </ul> <p>Each node of the grid has a P-wave, S-wave and Vp/Vs ratio associated with it, which is specified in lines 5 onward.</p> <ul> <li>Line 5 - 55229: Value of Vp, Vs or Vp/Vs (given by file name) at each node.</li> </ul> <p>The values loop over the grid, with longitude varying first, and radius last. The first node is at the grid origin. The second node is at the grid origin, plus the grid spacing in longitude. This continues for the `nlon` longitude nodes. The `nlon+1`the point is then at the grid origin, plus the latitude spacing; and so on.</p> <p>If there are `nr` radial nodes, `nlat` latitude nodes and `nlon` longitude nodes, then the following pseudocode shows how to read lines 5 forwards using the imaginary function `readline`, which reads a single real value from a plain text file and moves to the next line:</p> <p>```</p> <p># Comment: have already read the first four lines</p> <p>for ir in 1:nr:</p> <p>for ilat in 1:nlat:</p> <p>for ilon in 1:nlon:</p> <p>grid[ir,ilat,ilon] = readline(file_handle)</p> <p>```</p> <p>The repository also contains the event catalogue, with hypocenter locations after relocation by the FMTOMO code:</p> <p>4. event_catalogue.csv</p> <p>The columns are depth in km (negative values indicate depths below sea level, positive values indicate depths above sea level), latitude in degrees, longitude in degrees, depth error (km), latitude error (km), longitude error (km). </p>
Everglades Landscape Model (ELM) Code and Documentation
The Everglades Landscape Model (ELM) is an application instance of the generalized Ecological Landscape Modeling code package. For applications within the Florida Coastal Everglades (FCE) LTER, the ELM is one of the simulation modeling tools used to a) explore hypotheses of ecosystem processes in heterogenous spatial landscapes, b) extrapolate field-scale research findings across space and time, and c) predict the evolution of the Everglades landscape in response to plausible future scenarios. For ELM v.2.8.3-4, the 2 zip-archive packages here contains 1a) all (C) source code and unix (Bourne) shell scripts used to build and run the ELM (& includes Doxygen-generated hyperlinked source code documentation of every file/function/struct/parameter), 1b) all Everglades-specific input data used in historical (1981-2000) simulations; and 2) a complete documentation report with chapters including the Introduction&Goals, Model Data, Model Structure, Model Performance, and Model User's Guide. The ELM is being applied and updated routinely. Such updated information can be found at http://www.ecolandmod.com .
Deep learning to extract the meteorological by-catch of wildlife cameras: Supporting data, models and code
<p>This repository contains the data, models and code to train and deploy deep learning models related to the paper "Deep learning to extract the meteorological by-catch of wildlife cameras" published in the journal Global Change Biology (<a href="https://doi.org/10.1111/gcb.17078"><strong>https://doi.org/10.1111/gcb.17078</strong></a>).</p>
Understanding the Publish-Review-Curate (PRC) Model of Scholarly Communication - Data and Code
<p>Summary data for the number of articles submitted to publish-review-curate platforms as of August 2024 (Figure 1) [Update 14 Nov 2024: Added JMIRx. Data still from August 2024]</p> <p>Summary data for the number of articles reviewed by review platforms (Figure 2)</p> <p>Analysis code to produce Figures 1 and 2</p> <p>Code to extract articles for inclusion in data</p>
Compiled database, code and raw data for the article "A Comprehensive Database of Leaf Temperature, Water, and CO2 Fluxes in Young Oil Palm Plants Across Diverse Climate Scenarios for the Evaluation of Functional-Structural Models"
<p>This dataset results from an experiment on young oil palm plants (<em>Elaeis guineensis</em>) in the Ecotron facility from CNRS in Montpellier. Four plants were put in a microcosm one by one with varying climatic conditions to investigate the effect of climate on leaf temperature, CO2, and H2O fluxes at the plant scale. The conditions were defined based on typical daily conditions from a location where it is grown (Libo, Indonesia), <em>i.e.</em>, a day with no rainfall and near-average air temperature and humidity. This base condition was then modified by adding more CO2 (400, 600 and 800ppm), less radiation (typical cloudy sky), and more or less temperature and vapour pressure deficit (± 30%).</p> <p>Find more details from the <code>README.md</code> file in the repository or from the associated <a href="https://github.com/PalmStudio/Biophysics_database_palm" target="_blank" rel="noopener">Github repository</a>.</p>
Example code and data for ubms: An R package for fitting hierarchical occupancy and N-mixture abundance models in a Bayesian framework
<p>This repository contains an R script (grouse_example.R) and data (grouse_data.csv) used to reproduce the grouse abundance analysis described in Kellner, K. F., et al. (2021) ubms: An R package for fitting hierarchical occupancy and N-mixture abundance models in a Bayesian framework. Methods in Ecology and Evolution. The R script requires installation of the ubms R package, which can be obtained from CRAN (https://cran.r-project.org/package=ubms).</p> <p>The repository also contains an additional example occupancy analysis (occupancy_example.R) using the crossbill dataset included with the unmarked R package.</p>
Simulation Data for "Community-Driven Code Comparisons for Three-Dimensional Dynamic Modeling of Sequences of Earthquakes and Aseismic Slip"
<p>Simulation data from Jiang et al. (2022), "Community-Driven Code Comparisons for Three-Dimensional Dynamic Modeling of Sequences of Earthquakes and Aseismic Slip," <em>Journal of Geophysical Research: Solid Earth</em><em>.</em></p> <p>The archive includes simulation data for 3D SEAS benchmarks BP4-QD and BP5-QD that are analyzed in our paper (descriptions in NOTES.txt) </p> <p><strong>BP4-QD Benchmark Simulations:</strong><br>1000 m: jiang.5, lambert.8, barbot.3, barbot.2, dliu.2, li.4<br>500 m: jiang.3, lambert.3, barbot.5, barbot.7, ozawa</p> <p><strong>BP5-QD Benchmark Simulations:</strong><br>2000 m: jiang.6, lambert.8, liu.4, cattania.5, dli.7, barbot.3, dliu.10, li.3<br>1000 m: jiang.2, lambert.7, liu.5, cattania.3, ozawa, dli.5, barbot, dliu.6, li.2<br>500 m: jiang.4, lambert.9, liu.6, cattania.4, ozawa.2, dli.6, barbot.2, dliu.8<br>250 m: lambert.10, liu.7</p> <p><strong>BP5-QD with Off-Fault Data:</strong><br>1000 m: lambert.7, dli.5, barbot, dliu.6, li.2<br>500 m: lambert.9, dli.6, barbot.2, dliu.8</p> <p>Tables 2–4 in our paper summarizes details of numerical codes and selected simulations.</p> <p>The benchmark descriptions and the full suite of simulation data are available at SEAS online platform https://strike.scec.org/cvws/seas/.</p>
ConFiRMa dataset_01: simulation of CRM characterization tests with the OOFEM code (detailed level modelling)
<p>The Dataset collects the input files developed for the simulation of characterization tests performed on Composite Reinforced Mortar samples with the free open-source code OOFEM (detailed level modelling). The description of the numerical models and the analysis and comparison of the results can be found in paper "Characterization of Textile Reinforced Mortar: state of the art and detailed modelling with a free open source finite element code" (<a href="https://doi.org/10.1061/(ASCE)CC.1943-5614.0001240">https://doi.org/10.1061/(ASCE)CC.1943-5614.0001240</a>).</p> <p>OOFEM Version 2.5 (https://doi.org/10.5281/zenodo.4339630) was used for running the analyzes.</p> <p>ReadMe file provide a description of the different input files.</p> <p> </p>
ConFiRMa dataset_02: simulation of tests on CRM strengthened masonry elements with the OOFEM code (detailed level modelling)
<p>The Dataset collects the input files developed for the simulation of tests on masonry elements strengthened through Composite Reinforced Mortar with the free open-source code OOFEM (detailed level modelling). The description of the numerical models and the analysis and comparison of the results can be found in paper "Masonry elements strengthened through Textile-Reinforced Mortar:application of the detailed level modelling with a free open-source Finite-Element code".</p> <p>OOFEM Version 2.5 (https://doi.org/10.5281/zenodo.4339630) was used for running the analyzes.</p> <p>ReadMe file provide a description of the different input files.</p>
Data and code for: A conceptual model-based sediment connectivity assessment for patchy agricultural catchments
<p>Authors: Pedro V G Batista, Peter Fiener, Simon Scheper, Christine Alewell</p> <p>----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</p> <p>Abstract</p> <p>The accelerated sediment supply from agricultural soils to riverine and lacustrine environments leads to negative off-site consequences. In particular, the sediment connectivity from agricultural land to surface waters is strongly affected by landscape patchiness and the linear structures that separate field parcels (e.g. roads, tracks, hedges, and grass buffer strips). Understanding the interactions between these structures and sediment transfer is therefore crucial for minimising off-site erosion impacts. Although soil erosion models can be used to understand lateral sediment transport patterns, model-based connectivity assessments are hindered by the uncertainty in model structures and input data. In specific, the representation of linear landscape features in numerical soil redistribution models is often compromised by the spatial resolution of the input data and the quality of the process descriptions. Here we adapted the WaTEM/SEDEM model using high resolution spatial data (2 m x 2 m) to analyse the sediment connectivity in a very patchy mesoscale catchment (73 km<sup>2</sup>) of the Swiss Plateau. We used a global sensitivity analysis to explore model structural assumptions about how linear landscape features (dis)connect the sediment cascade, which allowed us to investigate the uncertainty in the model structure. Furthermore, we compared model simulations of hillslope sediment yields from five sub-catchments to tributary sediment loads, which were calculated with long-term water discharge and suspended sediment measurements. The sensitivity analysis revealed that the assumptions about how the road network (dis)connects the sediment transfer from field blocks to water courses had a much higher impact on modelled sediment yields than the uncertainty in model parameters. Moreover, model simulations showed a higher agreement with tributary sediment loads when the road network was assumed to directly connect sediments from hillslopes to water courses. Our results ultimately illustrate how a high-density road network combined with an effective drainage system increases sediment connectivity from hillslopes to surface waters in agricultural landscapes. This further highlights the importance of considering linear landscape features and model structural uncertainty in soil erosion and sediment connectivity research.</p> <p> </p> <p>----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</p> <p>Metainformation</p> <p>This dataset includes:</p> <p>1 - The input data used for running the WaTEM/SEDEM model in the Baldegg catchment.</p> <p>2 - The discharge and sediment concentration data used for producing the sediment rating curves for the tributaries of the Lake Baldegg.</p> <p>3 - The model and sediment rating curve output data.</p> <p>4 - The R scripts for running the WaTEM/SEDEM model in the Baldegg catchment, the code for producing the sediment rating curves, and the code for summarising and analysing the model output data.</p> <p>----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</p> <p>The sediment concentration and water discharge data were supplied by Robert Lovas, from the Department of Environment and Energy of the Canton of Lucerne.</p> <p>The model input data were adapted from freely available ©swisstopo geodata products:</p> <p>Swisstopo. SwissALTI3D. Das hoch aufgelöste Terrainmodell der Schweiz, 2014.</p> <p>Swisstopo. Swiss Map Vector 25 Beta, Das digitale Landschaftsmodell der Schweiz. 2018.</p> <p>Swisstopo. SwissTLM3D. Das grossmassstäbliche Topografische Landschaftsmodell der Schweiz, 2020.</p> <p>----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</p> <p>For further information we refer to our preprint: https://doi.org/10.5194/hess-2021-231</p> <p> </p> <p> </p>
Code and measurement data - State of charge and state of health diagnosis of batteries with voltage-controlled models
<p><strong>This dataset contains the research data (code and measurement data) of the journal article: <a href="https://doi.org/10.1016/j.jpowsour.2022.231828">J. A. Braun, R. Behmann, D. Schmider, W. G. Bessler, "State of charge and state of health diagnosis of batteries with voltage-controlled models", Journal of Power Sources 544 (2022), 231828</a>.</strong></p> <p> </p> <p><strong>Abstract:</strong><br> The accurate diagnosis of state of charge (SOC) and state of health (SOH) is of utmost importance for battery users and for battery manufacturers. State diagnosis is commonly based on measuring battery current and using it in Coulomb counters or as input for a current-controlled model. Here we introduce a new algorithm based on measuring battery voltage and using it as input for a voltage-controlled model. We demonstrate the algorithm using fresh and pre-aged lithium-ion battery single cells operated under well-defined laboratory conditions on full cycles, shallow cycles, and a dynamic battery electric vehicle load profile. We show that both SOC and SOH are accurately estimated using a simple equivalent circuit model. The new algorithm is self-calibrating, is robust with respect to cell aging, allows to estimate SOH from arbitrary load profiles, and is numerically simpler than state-of-the-art model-based methods.</p> <p> </p> <p><strong>Intellectual property information:</strong><br> The Matlab codes and the research data provided here are under <strong><a href="https://creativecommons.org/licenses/by-nc/4.0/legalcode">CC-BY-NC-4.0</a></strong> license. Please note that the algorithms themselves are subject to industrial property rights, including, but not necessarily limited to, German patent <strong><a href="https://patents.google.com/patent/DE102019127828B4/en">DE102019127828B4</a></strong> and international patent application <strong><a href="https://patents.google.com/patent/WO2021073690A2/en">WO2021073690A2</a></strong>. Any use of the codes and algorithms presented here is subject to these property rights.</p> <p> </p> <p><strong>Overview of files:</strong><br> <strong>SOC_SOH_simple_model.m:</strong> Matlab script performing SOC and SOH diagnosis with the voltage-controlled "simple" equivalent circuit model. The script also reproduces the figures shown in the manuscript.</p> <p><strong>SOC_SOH_simple_extended.m:</strong> Matlab script performing SOC and SOH diagnosis with the voltage-controlled "extended" equivalent circuit model. The script also creates figures of additional data not shown in the manuscript.</p> <p><strong>Experimental_data_fresh_cell.csv:</strong> Tabulated experimental data (time, current, voltage, temperature) of the long-term experiment (99 h total with 1 s resolution) of a fresh lithium-ion cell. The cell is initally completely discharged. The data consist of full cycling, shallow cycling, and WLTP cycling.</p> <p><strong>Experimental_data_aged_cell.csv:</strong> Tabulated experimental data (time, current, voltage, temperature) of the long-term experiment (85 h total with 1 s resolution) of a pre-aged lithium-ion cell. The cell is initally completely discharged. The data consist of full cycling, shallow cycling, and WLTP cycling.</p> <p><strong>OCV_vs_SOC_curve.csv:</strong> Tabulated experimentally-derived open-circuit voltage (OCV) as function of state of charge (SOC). 1001 data points between SOC = 0 and SOC = 1 in increments of 0.001.</p> <p><strong>readme.txt:</strong> Overview of files with a short description.</p>
A Practical Tool-Chain for the Development of Coordination Scenarios - Graphical Modeler, DSL, Code Generators and Automaton-Based Simulator
<p>The Peer Model is a modeling tool for coordination based on blackboard-based collaboration. </p> <p>The tool-chain consists of a modeler, translator and simulator.</p> <p>Its goal is to help developers of distributed and concurrent coordination software better understand algorithms and identify deficiencies from the beginning.</p> <p><br> </p>
Model codes and simulation data for "Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS's Earth system model (ModelE-BiomeE v.1.0)"
<p>ModelE-BiomeE v1.0 model codes and data This folder contains the simulation data and model codes that were used in the paper ‘Modeling demographic-driven vegetation dynamics and ecosystem biogeochemical cycling in NASA GISS’s Earth system model (ModelE-BiomeE v.1.0)’ (https://doi.org/10.5194/gmd-2022-72). We included the data simulated by ModelE-BiomeE v.1.0 with settings of full demography (folder FullDemography) and single cohort (folder SingleCohort), and initial settings of land grids and vegetation data (folder GlobalVegetation). The codes include the full ModelE 2.1, module BiomeE files in ModelE, and the standalone BiomeE. In the folder FullDemography, we have 4 netcdf files for global output and 25 files for single grids output. The files ‘FullDM_2588_JAN.nc’ and ‘FullDM_2588_JUL.nc’ are the original model output of January and July in the year 2588. The file ‘FullDM_2588_Annual.nc’ is the yearly summary of model simulations. The file ‘FullDM_Selected.nc’ is an annual summary of 588 years of model simulation only with selected variables. The csv files are for single grids output at the time steps of daily and yearly. The last digit 1~8 represents the sites of 'BNC','MNT','HF','OKR','KZ','SV','WGK','TPJ', respectively (Table 1). Table 1 Site ID and file number ['BNC', 'MNT', 'HF', 'OKR', 'KZ', 'SV', 'WGK', 'TPJ'] ['8991', '8992', '8993', '8994', '8995', '8996', '8997', '8998'] ['8971', '8972', '8973', '8974', '8975', '8976', '8977', '8978'] ['8961', '8962', '8963', '8974', '8965', '8966', '8977', '8968'] Please refer to Table 2 in the paper for the detail of these 8 sites. ‘DailyLAIGPP.csv’ is a summary of all ‘DailyEcosystem’ files with LAI and GPP data. We included the Python scripts that can be used to generate the figures in out paper (Plotting-BiomeE-MsTMIP.py, Plotting-Scatter-Comparison.py, PlottingBiomeEMaps.py, and PlottingGridOutput.py). For the convenience of readers (in reproducing our figures), we included the summary of reanalysis of the data from observations and MsTMIP in folder ‘Sum-Obs-Simu’. Please refer to the original sources listed in our paper for the detail of these data.</p>
Data and code for: Precipitation Biases and Snow Physics Limitations Drive the Uncertainties in Macroscale Modeled Snow Water Equivalent
<p>Code and data to reproduce figures in manuscript entitled "Precipitation Biases and Snow Physics Limitations Drive the Uncertainties in Macroscale Modeled Snow Water Equivalent" published in Hydrology and Earth System Sciences (https://hess.copernicus.org/preprints/hess-2022-136/).</p> <p>The contents include three folders, "Codes", "Data", and "Figures". In "Codes" folder, R scripts are listed in the order needed to reproduce the figures. All code is written in R version 4.2.0. Data sets needed to reproduce figures are provided in "Data" folder (Rdata format). The pdf files in "Figures" folder are outputs generated from the corresponding R scripts. Note that final figures in the article were produced by combining multiple figures using a vector graphics software (Inkscape) or PowerPoint. Please contact Eunsang Cho (<a href="mailto:eunsang.cho@nasa.gov">eunsang.cho@nasa.gov</a>) with any questions. </p> <p>Preferred citation: Cho, E., Vuyovich, C. M., Kumar, S. V., Wrzesien, M. L., Kim, R. S., and Jacobs, J. M. (2022). Precipitation Biases and Snow Physics Limitations Drive the Uncertainties in Macroscale Modeled Snow Water Equivalent, Hydrol. Earth Syst. Sci., https://doi.org/10.5194/hess-2022-136.</p> <p>Corresponding author: Eunsang Cho (<a href="mailto:eunsang.cho@nasa.gov">eunsang.cho@nasa.gov</a>; <a href="mailto:escho@umd.edu">escho@umd.edu</a>)</p>
Privacy-by-Design Maturity Model: literature review, coding, model creation and evaluation
<p>Results from two multivocal literature reviews (MLRs) and subsequent coding, formulation of capabilities and dependencies, creation of maturity matrix and evaluation results. Used in the creation of a PbD domain model and extraction of core activities for PbD in Information Systems design. Part of the <a href="https://www.privacymaturity.org/" target="_blank" rel="noopener">Privacy-by-Design Maturity</a> research project by the <a href="https://www.uu.nl/en/research/ai-labs/ai-lab-for-the-public-services" target="_blank" rel="noopener">AI Lab for Public Services</a>.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.