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57 results for “Monacha cantiana”
Supplementary material 7 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Concatenated sequences of COI + 16SrDNA long + H3 + [(5.8SrDNA)+ITS2+(28SrDNA)] used in NJ/ML-MEGA7/ML-IQ Tree/RAxML/BI analysis (Fig. 11)
Supplementary material 6 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Concatenated sequences of H3 + [(5.8SrDNA)+ITS2+(28SrDNA)] used in NJ/ML-MEGA7/IQ Tree/RAxML/BI analysis (Fig. 10)
Supplementary material 9 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Maximum Likelihood (ML) tree of 16SrDNA haplotypes of Monacha cantiana
Supplementary material 8 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Maximum Likelihood (ML) tree of 16SrDNA haplotypes of Monacha cantiana
Supplementary material 5 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Concatenated sequences of COI+16SrDNA used in NJ/ML-MEGA7/IQ Tree/RAxML/BI analysis (Fig. 9)
Supplementary material 4 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
ITS2 sequences from GenBank used for molecular analysis comparisons (haplotypes in bold)
Supplementary material 1 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
COI sequences from GenBank used for molecular analysis comparisons (haplotypes in bold)
Supplementary material 10 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Maximum Likelihood (ML) tree of ITS2 (flanked with 5.8S and 28SrDNA) haplotypes of Monacha cantiana
Supplementary material 2 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
16SrDNA sequences from GenBank used for molecular analysis comparisons (haplotypes in bold)
Supplementary material 3 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
H3 sequences from GenBank used for molecular analysis comparisons (haplotypes in bold)
Figure 9 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 9 Maximum Likelihood (ML) tree of concatenated COI and 16SrDNA haplotypes of Monacha cantiana. New COI and 16SrDNA sequences of M. cantiana (Table 1, Suppl. material 5) were compared with concatenated COI and 16SrDNA sequences of M. cantiana s.l. and M. cartusiana obtained from GenBank (Suppl. materials 1, 2, 5). Length of sequences was 1444 positions (615 of COI + 829 of 16SrDNA). The Bayesian Information Criterion (BIC) specified T92+G+I the best nucleotide substitution model in MEGA7, or HKY+F+G4 for COI and TIM2+F+G4 for 16SrDNA partition in IQ-Tree, RAxML and MrBayes. Numbers next to main branches indicate (left to right): bootstrap supports above 50% calculated by NJ-MEGA7 (Saitou and Nei 1987), ML-MEGA7 (Kumar et al. 2016), IQ-Tree (Trifinopoulos et al. 2016), RAxML (Stamatakis 2014), and posterior probabilities by BI (Ronquist et al. 2012). The tree was rooted with Trochulus hispidus concatenated sequences obtained from GenBank (Suppl. material 5).
Figure 8 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 8 Maximum Likelihood (ML) tree of COI haplotypes of Monacha cantiana. New COI sequences of M. cantiana (Table 1) were compared with COI sequences of M. cantiana s.l., M. parumcincta, M. pantanellii and M. cartusiana obtained from GenBank (Suppl. material 1). Sequences were cut to 591 bp. HKY+G+I was the best nucleotide substitution model according to the Bayesian Information Criterion (BIC). The tree was rooted with Trochulus hispidus sequences obtained from GenBank (Suppl. material 1).
Figure 5 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 5 Distal genitalia genitalia of Monacha cantiana from France. Specimen Esc1 from Oise, Escales-Saint-Pierre (A–C) and specimen Epa1 from Somme, Épagne-Épagnette, roadside (D). Distal genitalia (A), transverse sections of medial epiphallus (B), apical penial papilla (C) and internal structure of distal genitalia (D).
Figure 7 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 7 Analysis of French specimens with "lineage" constraint on the original matrix (A–C) and Z-matrix (shape-related) (D–F) of selected genital sections. Principal component analysis (PCA) (A, D) and redundancy analysis (RDA) with groups shown as ellipses representing 95% confidence intervals with standard errors (B, E) and as convex hull polygons (C, F).
Figure 10 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 10 Maximum Likelihood (ML) tree of concatenated H3 and ITS2 (flanked with 5.8S and 28SrDNA) haplotypes of Monacha cantiana. New H3 and ITS2 sequences of M. cantiana (Table 1) were compared with concatenated H3 and ITS2 sequences of M. cantiana s.l. obtained from GenBank (Suppl. materials 3, 4). Length of sequences was 1054 positions (279 of H3 + 775 of ITS2). The Bayesian Information Criterion (BIC) specified T92+G+I the best nucleotide substitution model in MEGA7, or K2P+I for H3 and K3P+I for ITS2 partition in IQ-Tree, RAxML, and MrBayes. Numbers next to main branches indicate (left to right): bootstrap supports above 50% calculated by NJ-MEGA7 (Saitou and Nei 1987), ML-MEGA7 (Kumar et al. 2016), IQ-Tree (Trifinopoulos et al. 2016), RAxML (Stamatakis 2014) and posterior probabilities by BI (Ronquist et al. 2012). The tree was rooted with Trochulus hispidus concatenated sequences obtained from GenBank (Suppl. material 6).
Figure 3 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 3 Analysis of French specimens with "lineage" constraint on the original matrix (A–C) and Z-matrix (shape-related) (D–F) of selected shell sections. Principal component analysis (PCA) (A, D) and redundancy analysis (RDA) with groups shown as ellipses representing 95% confidence intervals with standard errors (B, E) and as convex hull polygons (C, F).
Figure 2 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 2 Shells of Monacha cantiana from France. Specimen Esc1 from Oise, Escales-Saint-Pierre (A), specimen Ble1 from Pas-de-Calais, Blecquenecques n. Marquise (B), specimen Pie1 from Seine-Maritime, Pierrepont (C) and specimen Bet1 from Seine-Maritime, Béthencourt n. Grandcourt (D).
Figure 1 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 1 Map of localities of the populations of Monacha cantiana analysed. See Table 1 for details of populations 1–26, Brulé and Bichain (2019) for populations 27 and 28, and Pieńkowska et al. (2019a) for populations 29–32.
Figure 4 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 4 Distal genitalia of Monacha cantiana from France. Specimen Bet1 from Seine-Maritime, Béthencourt n. Grandcourt (A–C) and specimen Ble1 from Pas-de-Calais, Blecquenecques n. Marquise (D–F). Distal genitalia (A, D), transverse sections of medial epiphallus (B, E) and apical penial papilla (C, F).
Figure 11 from: Pieńkowska JR, Manganelli G, Proćków M, Barbato D, Sosnowska K, Giusti F, Lesicki A (2024) Next step in Monacha cantiana (Montagu, 1803) phylogeography: northern French and Dutch populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 1198: 55-86. https://doi.org/10.3897/zookeys.1198.119738
Figure 11 Maximum Likelihood (ML) tree of concatenated COI, 16SrDNA, H3, and ITS2 (flanked with 5.8S and 28SrDNA) haplotypes of Monacha cantiana. COI, 16SrDNA, H3, and ITS2 sequences of M. cantiana were compared with sequences of M. cantiana s.l. and M. cartusiana obtained from GenBank (Suppl. materials 1–4, 7). Length of sequences was 2498 positions (615 of COI, 829 of 16SrDNA, 279 of H3, and 775 of ITS2). Bayesian Information Criterion (BIC) specified GTR+G+I the best nucleotide substitution model in MEGA7, or HKY+F+G4 for COI, TIM2+F+I for 16SrDNA, TIM3e+I+G4 for H3, and K3P+I+G4 for ITS2 partition in IQ-Tree, RAxML, and MrBayes. Numbers next to main branches indicate (left to right): bootstrap support above 50% calculated by NJ-MEGA7 (Saitou and Nei 1987), ML-MEGA7 (Kumar et al. 2016), IQ-Tree (Trifinopoulos et al. 2016), RAxML (Stamatakis 2014), and posterior probabilities by BI (Ronquist et al. 2012). The tree was rooted with Trochulus hispidus concatenated sequences obtained from GenBank (Suppl. material 7).
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