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41 results for “Moonlight”
Predictive modeling of moonlighting DNA-binding proteins
<p>This repository contains the codes used for the prediction of moonlighting proteins in the paper "Predictive modeling of moonlighting DNA binding proteins".</p> <p>The repository is organized as the following:</p> <p>1. The DNA binding protein identifiers and their features that were used to train the models for the prediction of DNA binding Moonlighting proteins.</p> <p>2. Five feature sets were used to create Catboost models that make predictions. The source code for generating predictions based on all the features and predictions based on particular features is supplied. In addition, the source code for generating maximum and average ensemble predictions has been made available. A detailed explanation is given in README file.</p>
Fig 3 in Begonia elachista Moonlight & Tebbitt sp. nov., an enigmatic new species and a new section of Begonia (Begoniaceae) from Peru
Fig 3. Begonia elachista Moonlight & Tebbitt sp. nov. A. Whole plant. B. Male and female Fower, front view. C. Female Fower, side view. D. Habit and associated vegetation. E– F. Habitat and wild population. Scale bars: A = 1 cm; B = 5 mm; C = 2 mm; D = 2 cm; E–F = 10 cm. Photographed by Peter Moonlight. All from P. Moonlight & A. Daza 318 (E).
Fig 1. 50 in Begonia elachista Moonlight & Tebbitt sp. nov., an enigmatic new species and a new section of Begonia (Begoniaceae) from Peru
Fig 1. 50% majority rule consensus tree of MrBayes analysis of Neotropical Clade 2 (NC2) of Begonia. Dotted lines indicate posterior clade probabilities <0.85. P, perenniation of species in NC2: blue, tuberous; green, rhizomatous; yellow, upright stems. G, geographic range of species in NC2: red, western South American; pink, eastern South America; light blue, Central America and Mexico.
Fig 2 in Begonia elachista Moonlight & Tebbitt sp. nov., an enigmatic new species and a new section of Begonia (Begoniaceae) from Peru
Fig 2. Begonia elachista Moonlight & Tebbitt sp. nov. A. Habit. B. Male Fower, front view. C. Branch of infructescence. D. Female Fower, side view. E. Stamens, front and side view. F. Style, front and back view. Scale bars: A–D = 1 cm; E–F = 1 mm. Drawn by Claire Banks. From P. Moonlight & A. Daza 318 (E).
Moonlight synchronous flights across three western palearctic swifts mirror size dependent prey preferences
<p><strong>Abstract</strong></p> <p>Recent studies have suggested the presence of moonlight mediated behaviour in avian aerial insectivores, such as swifts. At the same time swift species also show differences in prey (size) preferences. Here, we use the combined analysis of state-of-the-art activity logger data across three swift species, the Common, Pallid and Alpine swifts, to quantify flight height and activity responses to crepuscular and nocturnal light conditions. Our results show a significant response in flight heights to moonlight illuminance for Common and Pallid swifts, while a moonlight driven response is absent in Alpine swifts. Swift flight responses followed the size dependent altitude gradient of their insect prey. We show a weak relationship between night-time illuminance driven responses and twilight ascending behaviour, suggesting a decoupling of both crepuscular and night-time behaviour. We suggest that swifts optimise their flight behaviour to adapt to favourable night-time light conditions, driven by light responsive and size-dependent vertical insect stratification and weather conditions.</p> <blockquote> <p>You are required to cite both the Zenodo data repository as well as the BioRXiv pre-print when using this data, as:</p> <p>Hufkens et al. 2023. Moonlight synchronous flights across three western palearctic swifts mirror size dependent prey preferences. doi://10.5281/zenodo.7814214</p> <p>Hufkens et al. 2023. Moonlight synchronous flights across three western palearctic swifts mirror size dependent prey preferences. bioRxiv 2023.04.25.538243; doi: https://doi.org/10.1101/2023.04.25.538243</p> </blockquote> <p><strong>Use</strong></p> <p>This is a deposited version of the releases on Github.</p> <p>Either download this Zenodo repository or clone or download the project Github <a href="https://github.com/bluegreen-labs/swift_lunar_synchrony/archive/refs/heads/main.zip">zip file</a>.</p> <pre><code class="language-bash">git clone https://github.com/bluegreen-labs/swift_lunar_synchrony.git</code></pre> <p>Unzip the downloaded data if required. The repository is an `R` project and can be opened in <a href="https://posit.co/download/rstudio-desktop/">RStudio</a>, which will set the correct relative path.</p> <p><strong>Data structure & analysis</strong></p> <p>Analysis data is saved as compressed R serial files (.rds) in the <a href="https://github.com/bluegreen-labs/swift_lunar_synchrony/tree/main/data">`data` folder</a>. Scripts to reproduce the main statistical results are provided in the <a href="https://github.com/bluegreen-labs/swift_lunar_synchrony/tree/main/analysis">`analysis` folder</a>. A matching render of the analysis using the shared data is provided as <a href="http://bluegreen-labs.github.io/swift_lunar_synchrony/">dynamic webpage</a>.</p> <p><strong>Licensing</strong></p> <p>Be mindful of the CC-BY 4.0 license of the data and figures. Reuse is permitted on the condition of proper attribution and documentation of any changes.</p>
Fig. 93. Begonia speculum Moonlight & Tebbitt. A. Habit. B. Staminate flower, front view. C. Pistillate flower, side view. D. Stamen, front view. E. Stamen, side view. F. Pistil, front view. G. Pistil, back view. H in The genus Begonia (Begoniaceae) in Peru
Fig. 93. Begonia speculum Moonlight & Tebbitt. A. Habit. B. Staminate flower, front view. C. Pistillate flower, side view. D. Stamen, front view. E. Stamen, side view. F. Pistil, front view. G. Pistil, back view. H. Infructescence. Illustration by Claire Banks from P.W. Moonlight & A. Daza 158 (E). Reproduced from Moonlight & Tebbitt (2016), with the permission of Edinburgh Journal of Botany.
Fig. 73. Begonia chemillenensis Moonlight. A. Habit. B in The genus Begonia (Begoniaceae) in Peru
Fig. 73. Begonia chemillenensis Moonlight. A. Habit. B. Branch of infructescence. C. Branch of inflorescence. D. Bract. E. Staminate flower, front view view. F. Stamens, front and side view. G. Pistillate flower, side view. H. Style and stigma, front and back view. Illustration by Claire Banks from I. Huamantupa et al. 11435 (A), P.W. Moonlight & A. Daza 287 (B, F, H), and 317 (C, D, E, G). Reproduced from Moonlight et al. (2017b), with the permission of Edinburgh Journal of Botany.
Fig. 79. Begonia elachista Moonlight & Tebbitt. A. Habit. B. Staminate flower, front view. C. Infructescence. D. Pistillate flower, side view. E. Stamens, front view. F. Stamens, side view. G. Pistil, back view. H in The genus Begonia (Begoniaceae) in Peru
Fig. 79. Begonia elachista Moonlight & Tebbitt. A. Habit. B. Staminate flower, front view. C. Infructescence. D. Pistillate flower, side view. E. Stamens, front view. F. Stamens, side view. G. Pistil, back view. H. Pistil, front view. Illustration by Claire Banks from P.W. Moonlight & A. Daza 318 (E). Reproduced from Moonlight et al. (2017a), with the permission of European Journal of Botany.
Fig. 75. Begonia scorpiocaulis Moonlight & Tebbitt. A. Habit. B. Pistillate flower, side view. C. Bracteole. D. Bract. E. Pistil, front view. F in The genus Begonia (Begoniaceae) in Peru
Fig. 75. Begonia scorpiocaulis Moonlight & Tebbitt. A. Habit. B. Pistillate flower, side view. C. Bracteole. D. Bract. E. Pistil, front view. F. Pistil, back view. Illustration by Claire Banks from A.H. Gentry 27367 (MO). Reproduced from Moonlight et al. (2017b), with the permission of Edinburgh Journal of Botany.
Fig. 25. Begonia amoeboides Moonlight. A. Habit. B. Stamen, front view. C. Staminate flower, front view. D. Pistillate flower, side view. E in The genus Begonia (Begoniaceae) in Peru
Fig. 25. Begonia amoeboides Moonlight. A. Habit. B. Stamen, front view. C. Staminate flower, front view. D. Pistillate flower, side view. E. Pistils, side view. Illustration by Claire Banks from P.W. Moonlight & A. Daza 150 (E).
Data and code for: Time of night and moonlight structure vertical space use by insectivorous bats in a Neotropical rainforest: an acoustic monitoring study
<p>Abstract</p> <p>Previous research has shown diverse vertical space use by various taxa, highlighting the importance of forest canopy. Yet, we often fail to explore how this three-dimensional space use changes over time. Here we use canopy tower systems in French Guiana to monitor neotropical bat activity above and below the forest canopy throughout nine nights in the wet season. We show that different bats use both canopy and understory space differently, and that this can change throughout the night. We find that bats are overall more active in the canopy, but multiple species/acoustic complexes are more active in the understory. We also find that species that do not seem to prefer understory or canopy, when data are aggregated by night, do show temporally changing preferences in hourly activity. This work highlights the need to consider temporal axes in studies of space use, both throughout daily cycles and across seasons.</p>
Moonlight Inn
位在阿美族聖山都蘭山腰的月光小棧 月光小棧位於都蘭山麓,前身為都蘭林場行政中心、公教人員休閒教育中心,後為東部海岸國家風景區管理處所有。月光小棧目前一樓由在地藝文團隊「女妖在說畫」藝廊經營作為藝術家展演空間,不定期舉辦動、靜態的人文展演活動,二樓則保留2003年林正盛導演拍攝之「月光下,我記得」的電影場景,提供遊客欣賞玩味;右側閣樓小空間則有影音播放室,以影音方式呈現月光小棧歷年活動紀錄。 主體建築另一側則有「月光咖啡屋」,裝潢皆使用漂流木等素材組合而成,十分具有特色。除了販售咖啡、飲品與手工茶點外,也展售許多在地創作者的手創商品與特色異國商品。 Source: Objaverse 1.0 / Sketchfab
Moonlight influence on quality of nestlings of scops owls depends on paternal coloration
<p>The moon might favour the maintenance of colour polymorphism via disruptive selection if the different colour variants performed differently in terms of prey capture under different moonlight levels. Moonlight, however, may affect prey capture as a by side effect of its influence on prey behaviours. Here we combine data of parental provisioning and owlets' quality with one ex-situ study of grasshoppers' activity to test whether Eurasian scops owls (Otus scops) with different plumage colour and their prey are differently affected by moonlight. Food provisioning increased from new- to full-moon. However, the effect of moonlight on owlet mass gain and immune response depended on paternal coloration. On the one hand, body mass gain of nestlings of the greyest fathers increased from nights with new- to full-moon, whereas it did not change with moonlight for the brownest fathers. On the other hand, PHA response of nestlings of the brownest fathers increased with high moonlight levels during the first week of life, whereas it did not change with moonlight levels for the greyest fathers. Grasshoppers were more active at new moon than at full or waning moon. Our study provides supporting evidence that moonlight influences the behaviour of both scops owls and its prey and suggests that fluctuations in environmental conditions can modulate the advantages of morphs. These results are important because they provide a general insight into a little appreciated mechanism for the maintenance of colour polymorphism in natural populations based on the interactive effect of different environmental factors.</p>
Two light sensors decode moonlight versus sunlight to adjust a plastic circadian/circalunidian clock to moon phase
<p>Many species synchronize their physiology and behavior to specific hours. It is commonly assumed that sunlight acts as the main entrainment signal for ~24h clocks. However, the moon provides similarly regular time information. Consistently, a growing number of studies have reported correlations between diel behavior and lunidian cycles. Yet, mechanistic insight into the possible influences of the moon on ~24hr timers remains scarce.</p> <div> <div> <div class="msocomtxt"> <p class="MsoNormal"><span>We have explored the marine bristleworm </span><em><span>Platynereis dumerilii</span></em><span> to investigate the role of moonlight in the timing of daily behavior. We uncover that moonlight, besides its role in monthly timing, also schedules the exact hour of nocturnal swarming onset to the nights' darkest times. Our work reveals that extended moonlight impacts on a plastic clock that exhibits <24h (moonlit) or >24h (no moon) periodicity. Abundance, light sensitivity, and genetic requirement indicate that the <em>Platynereis </em>light receptor molecule r-Opsin1 serves as a receptor that senses moonrise, whereas the cryptochrome protein L-Cry<em> </em>is required to discriminate the proper valence of nocturnal light as either moon- or sunlight. Comparative experiments in <em>Drosophila </em>suggest that cryptochrome's principal requirement for light valence interpretation is conserved. Its exact biochemical properties differ, however, between species with dissimilar timing ecology.</span></p> <p class="MsoNormal"><span>Our work advances the molecular understanding of lunar impact on fundamental rhythmic processes, including those of marine mass spawners endangered by anthropogenic change.</span></p> </div> </div> </div>
Raw data for the article: A Cryptochrome adopts distinct moon- and sunlight states and functions as sun- versus moonlight interpreter in monthly oscillator entrainment
<p>The moon's monthly cycle synchronizes reproduction in countless marine organisms. The mass-spawning bristle worm Platynereis dumerilii uses an endogenous monthly oscillator to phase reproduction to specific days. Classical work showed that this oscillator is set by full moon. But how do organisms recognize such a specific moon phase? We uncover that the light receptor L-Cryptochrome (L-Cry) is able to discriminate between different moonlight durations, as well as between sun- and moonlight. Consistent with L-Cry's function as light valence interpreter, its genetic loss leads to a faster re-entrainment under artificially strong nocturnal light. This suggests that L-Cry blocks "wrong" light from impacting on the monthly oscillator. A biochemical characterization of purified L-Cry protein, exposed to naturalistic sun- or moonlight, reveals the formation of distinct sun- and moonlight states characterized by different photoreduction- and recovery kinetics of L-Cry's co-factor Flavin Adenine Dinucleotide. In vivo, L-Cry's sun- versus moonlight states correlate with distinct sub-cellular localizations, indicating different signalling. In contrast, r-Opsin1, the most abundant ocular opsin, is not required for monthly oscillator entrainment. Our work reveals a new concept for correct moonlight interpretation involving a "valence interpreter" that provides entraining photoreceptor(s) with light source and moon phase information. These findings advance our mechanistic understanding of a fundamental biological phenomenon: moon-controlled monthly timing. Such level of understanding is also an essential prerequisite to tackle anthropogenic threats on marine ecology.</p>
Metabolic enzymes moonlight as selective autophagy receptors to protect plants against viral-induced cellular damage
<p>The dataset contains all the original raw files for the following study:</p> <p><strong>Metabolic enzymes moonlight as selective autophagy receptors </strong><strong>to protect plants against viral-induced cellular damage</strong></p> <p>Marion Clavel<sup>1,2,*</sup>, Anita Bianchi<sup>1</sup>, Roksolana Kobylinska<sup>1</sup>, Roan Groh<sup>1,3</sup>, Juncai Ma<sup>4</sup>, Ranjith K. Papareddy<sup>1</sup>, Nenad Grujic<sup>1</sup>, Lorenzo Picchianti<sup>1,3</sup>, Ethan Stewart<sup>5</sup>, Michael Schutzbier<sup>1</sup>, Karel Stejskal<sup>1</sup>, Juan Carlos de la Concepcion<sup>1</sup>, Victor Sanchez de Medina Hernandez<sup>1,3</sup>, Yoav Voichek<sup>1</sup>, Pieter Clauw<sup>1</sup><strong>, </strong>Joanna Gunis<sup>1</sup>, Gerhard Durnberger<sup>1</sup>, Jens Christian Muelders<sup>2</sup>, Annett Grimm<sup>2</sup>, Arthur Sedivy<sup>5</sup>, Mathieu Erhardt<sup>6</sup>, Victoria Vyboishchikov<sup>1</sup>, Peng Gao<sup>1</sup>, Esther Lechner<sup>6</sup>, Emilie Vantard<sup>6</sup>, Jakub Jez<sup>5</sup>, Elisabeth Roitinger<sup>1</sup>, Pascal Genschik<sup>6</sup>, Byung-Ho Kang<sup>4</sup>, Yasin Dagdas<sup>1,*</sup></p> <p><strong> </strong></p> <p><strong>Affiliations</strong></p> <p><sup>1</sup>Gregor Mendel Institute, Austrian Academy of Sciences, Vienna BioCenter, Vienna, Austria.</p> <p><sup>2</sup>Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany</p> <p><sup>3</sup>Vienna BioCenter PhD Program, Doctoral School of the University at Vienna and Medical University of Vienna, Vienna, Austria</p> <p><sup>4</sup>School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China</p> <p><sup>5</sup>Vienna Biocenter Core Facilities (VBCF), Vienna, Austria</p> <p><sup>6</sup>Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, 12, rue du Général Zimmer, 67084 Strasbourg, France</p> <p> </p> <p>*Correspondence: Marion Clavel (marion.clavel@mpimp-golm.mpg.de),</p> <p> Yasin Dagdas (yasin.dagdas@gmi.oeaw.ac.at)</p> <p><strong> </strong></p> <p><strong>Abstract</strong></p> <p>RNA viruses co-opt the host endomembrane system and organelles to build replication complexes for infection. How the host responds to these membrane perturbations is poorly understood. Here, we explore the autophagic response of <em>Arabidopsis thaliana</em> to three viruses that hijack different cellular compartments. Autophagy is significantly induced within systemically infected tissues, its disruption rendering plants highly sensitive to infection. Contrary to being an antiviral defense mechanism as previously suggested, quantitative analyses of the viral loads established autophagy as a tolerance pathway. Further analysis of one of these viruses, the Turnip Crinkle Virus (TCV) that hijack mitochondria, showed that despite perturbing mitochondrial integrity, TCV does not trigger a typical mitophagy response. Instead, TCV and Turnip yellow mosaic virus (TYMV) infection activates a distinct selective autophagy mechanism, where oligomeric metabolic enzymes moonlight as selective autophagy receptors and degrade key executors of defense and cell death such as EDS1. Altogether, our study reveals an autophagy-regulated metabolic rheostat that gauges cellular integrity during viral infection and degrades cell death executors to avoid catastrophic amplification of immune signaling.</p> <p> </p> <p>One archive corresponds to one main or supplemental figure.</p>
Two light sensors decode moonlight versus sunlight to adjust a plastic circadian/circalunidian clock to moon phase
Open the record for dataset details and reuse information.
Moonlight influence on quality of nestlings of scops owls depends on paternal coloration
Open the record for dataset details and reuse information.
Raw data for the article: A Cryptochrome adopts distinct moon- and sunlight states and functions as sun- versus moonlight interpreter in monthly oscillator entrainment
Open the record for dataset details and reuse information.
Data and code for: A sensory ecology of fear: Eye size predicts moonlight avoidance responses in Neotropical electric fishes
<p>Data in support of: Eye size predicts moonlight avoidance responses in Neotropical electric fishes</p>
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