Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
4
datasets available to search
ShareScore release 0.9.0
Dataset results
4 results for “Mother Machine”
molyso Mother Machine Sample Datasets
<p>Example datasets for molyso, the MOther machine anaLYsis SOftware [ https://github.com/modsim/molyso ].</p> <p>The datasets show <em>Corynebacterium glutamicum</em> cells growing in a Mother Machine device. For additional information, please see the publication.</p>
Data for: Tools and methods for high-throughput single-cell imaging with the mother machine
Open the record for dataset details and reuse information.
Phase-contrast time-lapses of seven bacterial species growing in microfluidic mother machine traps
<p>This dataset and software accompany the article "Rapid label-free identification of seven bacterial species using microfluidics, single-cell time-lapse phase-contrast microscopy, and deep learning-based image and video classification" for reproducing the results.</p> <p>In the study, deep-learning models are trained to classify phase-contrast videos (time-lapses) of bacteria growing in microfluidic chip traps. The dataset consists of lab isolates of the species Pseudomonas aeruginosa, Escherichia coli, Klebsiella pneumoniae, Acinetobacter baumannii, Enterococcus faecalis, Proteus mirabilis, and Staphylococcus aureus. The video clips have around 30 frames each, captured during one hour of growth (2 minutes between each frame). The whole dataset consists of around 620,000 images from 19,500 traps.</p> <p>Additionally, the package contains software to re-run the experiments, generate output metrics, and build the graphs in the article.</p>
Cell Tracking Dataset (E. coli growing in the Mother Machine)
<pre>Dataset collected by the Dunlop lab (Boston University) E. coli growing in the mother machine Images taken every 5 minutes Each video consists of a single chamber within the mother machine 58 videos in the train dataset 15 videos in the val dataset 29 videos in the test dataset Data is formatted in the Cell Tracking Challenge Format (https://celltrackingchallenge.net/datasets/)</pre>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.