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ShareScore release 0.9.0
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35 results for “Murine small intestine”
Data from: High-molecular-weight polymers from dietary fiber drive aggregation of particulates in the murine small intestine
The lumen of the small intestine (SI) is filled with particulates: microbes, therapeutic particles, and food granules. The structure of this particulate suspension could impact uptake of drugs and nutrients and the function of microorganisms; however, little is understood about how this suspension is re-structured as it transits the gut. Here, we demonstrate that particles spontaneously aggregate in SI luminal fluid ex vivo. We find that mucins and immunoglobulins are not required for aggregation. Instead, aggregation can be controlled using polymers from dietary fiber in a manner that is qualitatively consistent with polymer-induced depletion interactions, which do not require specific chemical interactions. Furthermore, we find that aggregation is tunable; by feeding mice dietary fibers of different molecular weights, we can control aggregation in SI luminal fluid. This work suggests that the molecular weight and concentration of dietary polymers play an underappreciated role in shaping the physicochemical environment of the gut.
Data from: High-molecular-weight polymers from dietary fiber drive aggregation of particulates in the murine small intestine
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Detailed localisation of diet-induced changes in gene expression in the murine small intestine.
GEO Series GSE59054. Mus musculus. 116 samples. Type: Expression profiling by array.
Analysis of HOIL1-dependent gene expression in the murine small intestine
GEO Series GSE196550. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Murine small intestinal crypt cells: IGF-1 stimulated vs. control
GEO Series GSE20133. human gammaherpesvirus 4; JC polyomavirus; Human gammaherpesvirus 8; Betapolyomavirus macacae; Rattus norvegicus; Homo sapiens; Mus musculus; Human alphaherpesvirus 1; Human betaherpesvirus 5; Murid betaherpesvirus 1; Human immunodeficiency virus 1; Murid gammaherpesvirus 4; Betapolyomavirus hominis. 3 samples. Type: Non-coding RNA profiling by array.
Single cell analysis of epithelial (EPI), immune (IMM) and stromal cells (double negative, DN) cells from murine small intestine in steady state following LXR activation.
GEO Series GSE227726. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Co-culture of murine small intestinal organoids with type-3 innate lymphoid cells (ILC3)
GEO Series GSE243737. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profile at single cell level of cells from the murine small intestine (SI) lacking functional Apc.
GEO Series GSE229638. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
RNAseq of mRNA from murine small intestinal crypts
GEO Series GSE182934. Mus musculus. 20 samples. Type: Expression profiling by high throughput sequencing.
Deletion of Metal Transporter Zip14 (Slc39a14) Reduces Major Histocompatibility Complex II Expression in Murine Small Intestinal Epithelial Cells
GEO Series GSE280523. Mus musculus. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Fasting induces a biphasic adaptive metabolic response in murine small intestine
GEO Series GSE8019. Mus musculus. 12 samples. Type: Expression profiling by array.
Bulk RNA sequencing of NCR- ILC3s from the murine spleen and the small intestine
GEO Series GSE114749. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomal comparison between group 2 innate lymphoid cells (ILC2s) in the murine small intestine (SI-ILC2s) and those in white adipose tissue (WAT-ILC2s)
GEO Series GSE130530. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Next generation expression analysis of wild type and Acaca-/- murine small intestinal organoids
GEO Series GSE188386. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Single-cell gene expression profiling of CD4+ T cells from the murine small intestine lamina propria [steady-state_SI-Treg_10XscRNAseq]
GEO Series GSE241605. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Transcriptional profiling of murine small intestine in conventional or SPF housing conditions
GEO Series GSE171996. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Adult Murine Interstitial Cells of Cajal (ICC) and Small Intestine (Sm Int) Somatic piRNA-like RNA (pilRNA)
GEO Series GSE48388. Mus musculus. 2 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Transcriptome comparison of small and large intestine-derived monolayers and murine intestinal crypts
GEO Series GSE191018. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Gene expression analysis of CD122HI versus CD122LO Vγ7+ murine small intestinal IEL at 14-17 days of age
GEO Series GSE85422. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Single-cell sequencing of murine small intestinal dendritic cells
GEO Series GSE283808. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.