Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
46
datasets available to search
ShareScore release 0.7.1
Dataset results
46 results for “Mycorrhizal symbiosis”
Gene family expansions underpin context-dependency of the oldest mycorrhizal symbiosis
<p>This Zenodo archive is associated with the manuscript:</p> <p>Hernandez, D.J., Pohlmann, G.B., Afkhami, M.E. (2025) <span>Gene family expansions provide molecular flexibility required for context-dependent species interactions.</span> Ecology Letters.</p> <p>Abstract:</p> <p>As environments worldwide change at unprecedented rates during the Anthropocene, understanding context-dependency – how species regulate interactions to match changing environments – is crucial. However, generalizable molecular mechanisms underpinning context-dependency remain elusive. Combining comparative genomics across 42 angiosperms with transcriptomics, genome-wide association mapping, and gene duplication origin analyses, we show for the first time that gene family expansions undergird context-dependent regulation of species interactions. Gene families expanded in mycorrhizal fungi-associating plants display up to 200% more context-dependent gene expression and double the genetic variation associated with mycorrhizal benefits to plant fitness. Moreover, we discover these gene family expansions arise primarily from tandem duplications with >2-times more tandem duplications genome-wide, indicating gene family expansions continuously supply genetic variation throughout plant evolution allowing fine-tuning of context-dependency in species interactions.</p>
Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification - phylogenetic data
<p>This submission supplements the manuscript entitled <em>Evolutionary dynamics of mycorrhizal symbiosis in land plant diversification</em> by <strong>Frida A.A. Feijen, Rutger A. Vos, Jorinde Nuytinck & Vincent S.F.T. Merckx.</strong></p> <p>The contents of this submission are dating analysis results for rootings of the land plant topology. Contains the following files:</p> <ul> <li>*.log.gz BEAST logs</li> <li>*.trees.gz BEAST trees</li> <li>*.tiff screen dumps of tracer, showing the burn-in</li> <li>*.consensus.trees produced with treeannotator</li> </ul> <p><strong>For more information</strong>: https://github.com/naturalis/mycorrhiza/tree/v1.0.0</p>
Data from: Mycorrhizal symbiosis increases plant phylogenetic diversity and regulate community assembly
<p>The intricate mechanisms shaping plant diversity and community composition are the cornerstone of ecological understanding. Yet, the role of mycorrhizal symbiosis, the fundamental partnership between fungi and plant roots, in influencing community composition has often been underestimated. Here, we use extensive species survey data from 1,315 terrestrial ecosystem sites to elucidate the influence of mycorrhizal symbiosis on plant phylogenetic diversity and its implications for community assembly processes. Our findings demonstrate that increasing mycorrhizal symbiotic potential leads to greater phylogenetic dispersion within plant communities. Furthermore, we unveil a distinct dichotomy in the assembly processes governed by mycorrhizal status. Mycorrhizal species predominantly influence deterministic processes, suggesting a role in niche-based community assembly. Conversely, non-mycorrhizal species exert a stronger influence on stochastic processes, highlighting the importance of random events in shaping community structure. These results underscore the crucial but often hidden role of mycorrhizal symbiosis in driving plant community diversity and assembly. This study provides valuable insights into the complex mechanisms shaping ecological communities and the way for more informed conservation and management practices that acknowledge the complex interplay between symbiosis and ecological community dynamics.</p>
Data from: Mycorrhizal symbiosis increases plant phylogenetic diversity and regulate community assembly
Open the record for dataset details and reuse information.
Contrasting patterns in biomass allocation, root morphology and mycorrhizal symbiosis for phosphorus acquisition among 20 chickpea genotypes with different amounts of rhizosheath carboxylates
<p>1. Adjustments in root biomass allocation, root morphology, carboxylate exudation and mycorrhizal symbiosis are well-known strategies for plants to cope with phosphorus (P) deficiency. Large genotypic variation in these functional traits has been demonstrated within numerous species. Yet, whether these functional traits are coordinated differently among genotypes of a species to enhance P acquisition remains unknown.</p> <p>2. We characterised 11 root functional traits associated with P acquisition in 20 chickpea genotypes with contrasting amounts of rhizosheath carboxylates, grown in a glasshouse with severely limiting insoluble (10 mg kg<sup>–1</sup> FePO<sub>4</sub>), moderately limiting soluble (10 mg kg<sup>–1</sup> KH<sub>2</sub>PO<sub>4</sub>), and adequate (50 mg kg<sup>–1</sup> KH<sub>2</sub>PO<sub>4</sub>) P supply.</p> <p>3. Substantial variation was found among genotypes in root functional traits associated with P acquisition. Genotypes with a large amount of carboxylates (HRC) had thinner roots, and a lower root mass fraction and root mass density, but higher specific root length and colonisation by arbuscular mycorrhizal fungi (AMF) than genotypes with a small amount of rhizosheath carboxylates.</p> <p>4. In response to soil P availability, chickpea genotypes showed large plasticity in root biomass allocation, rhizosheath pH, carboxylate amount, and colonisation by AMF, but a limited response in most root morphological traits (i.e. mean root diameter, root mass density and specific root length). Shoot P content was strongly correlated with different root functional traits in the three P treatments.</p> <p>5. Our findings suggest a range of predictable relationships between root functional traits among chickpea genotypes; those with HRC tended to have relatively thinner roots with lower cost of root construction, while allocating more resources to carboxylate exudation and colonisation by AMF. The shift in the relationships between shoot P content and root functional traits indicates that <span class="fontstyle01"><span>root traits and/or trait combinations in chickpea vary in a manner that enhances P acquisition under specific soil P conditions (i.e. P sources/ levels)</span></span>. Such knowledge provides valuable information for chickpea genotype breeding and our understanding of evolution of traits with improved root/rhizosphere functioning.</p> <p> </p>
Data for mycorrhizal C/N ratio determines plant-derived carbon and nitrogen allocation to symbiosis
<p><span><span>Nutrient cycling in temperate forests is driven by carbon allocation of trees to soil via ectomycorrhizas (EM). The sink activities of different fungal taxa for host resources are unknown. Aboveground dual </span><span>labeling of young beech<span> with <sup>15</sup>N and <sup>13</sup>C was used to trace resource transport to ectomycorrhizal root tips. Isotope enrichment in EM correlated with that in the corresponding EM-attached lateral root, supporting that EM drive taxon-specific N- and C-fluxes. The enrichments with <sup>13</sup>C and <sup>15</sup>N in EM increased with decreasing C/N ratio of the symbiotic association. Abundances of EM species were positively correlated with <sup>13</sup>C enrichment, demonstrating higher fitness of stronger than of less C-demanding symbioses. Overall, our results imply that differences among the resource traits of EM species regulate the supply of the symbioses with host-derived C and N.</span></span></span></p> <p><span><span><span>Here we provide the data sets containing information on the identities of fungal species colonizing roots tips of European beech and for N, C, 15N and 13C contents in bark, coarse roots, fine roots, very fine lateral roots, ectomycorrhizal species and rhizosphere soil and for biomass of the different compartments. The data were collected 5 and 20 days after labelling.</span></span></span></p>
Formations of mycorrhizal symbiosis alter the phenolic heteropolymers in roots and leaves of four temperate woody species
<p>The decomposition rates of senesced tissues from plants associated with ectomycorrhizal (EcM) fungi tend to differ from that associated with arbuscular mycorrhizal (AM) fungi. However, the chemical underpinnings that could drive the observed differences in decomposition are less explored.</p> <p>Here, we characterized the content, composition, and spatial organization of phenolic heteropolymers in roots and leaves of four temperate tree species across eight plant-fungus combinations, forming either AM or EcM associations.</p> <p>Colonization by either AM or EcM fungi tended to decrease the abundance of lignin, condensed tannins, and ratios of lignin and nitrogen in roots and/or leaves, which would lead to lower chemical recalcitrance of tissues. The decrease in root lignin abundance by either mycorrhizal type was associated with an expanded cortex, potentially facilitating symbiosis. Additionally, changes in lignin molecular composition by mycorrhizal symbiosis differed between plant phylogenetic lineages irrespective of mycorrhizal type.</p> <p>Our results suggest that the mycorrhiza-associated changes in plant chemical traits that regulate litter decomposition may not be unique to AM or EcM associations; rather, both associations can reduce root and leaf chemical recalcitrance. Further, the differential modification in lignin composition by mycorrhizal symbiosis between plant phylogenetic groups highlights the influence of plant evolutionary history in plant-mycorrhizal interactions.</p>
Data from: Experimental evidence that phosphorus fertilization and arbuscular mycorrhizal symbiosis can reduce the carbon cost of phosphorus uptake
<p>Data from "Experimental evidence that phosphorus fertilization and arbuscular mycorrhizal symbiosis can reduce the carbon cost of phosphorus uptake". Functional Ecology</p>
Data for Torppa et al. 2023 'Soil compaction effects on arbuscular mycorrhizal symbiosis in wheat depend on host plant variety'
<p>The dataset consists of the data that supports the findings of the article 'Soil compaction effects on arbuscular mycorrhizal symbiosis in wheat depend on host plant variety’ written by Torppa et al. and published in Plant and Soil in 2023. The data consists of arbuscular mycorrhizal colonization, fatty acid and community data, as well as soil and crop nutrient and yield data.</p>
Data for mycorrhizal C/N ratio determines plant-derived carbon and nitrogen allocation to symbiosis
Open the record for dataset details and reuse information.
Formations of mycorrhizal symbiosis alter the phenolic heteropolymers in roots and leaves of four temperate woody species
Open the record for dataset details and reuse information.
Contrasting patterns in biomass allocation, root morphology and mycorrhizal symbiosis for phosphorus acquisition among 20 chickpea genotypes with different amounts of rhizosheath carboxylates
Open the record for dataset details and reuse information.
Arbuscular mycorrhizal symbiosis increases P uptake and productivity of mixtures of maize varieties compared to monocultures
<p>Ecological intensification seeks to achieve crop yield increases through intensifying complementary or facilitative interactions between plant species or varieties. Different species of arbuscular mycorrhizal fungi (AMF) exhibit niche differentiation and show selectivity towards certain plants, which can further enhance complementarity. It is not clear whether in the presence of one AMF species, where mycelial networks connect crop species, opportunities for complementarity effects may be reduced.</p> <p>We grew monocultures and mixtures of maize varieties in a greenhouse with one species of AMF, Funneliformis mosseae, during two consecutive years to investigate whether under such conditions the mycorrhizal symbiosis would affect complementarity and overyielding compared to non-mycorrhizal plants.</p> <p>Variety mixtures showed increased phosphatase activity and mycorrhizal colonization, enhanced P-uptake and overyielding when plants were mycorrhizal. There was no overyielding when plants were non-mycorrhizal. The increase in relative yield total was due to complementarity effects.</p> <p>Our data show that the magnitude of mycorrhiza-induced overyielding in maize variety mixtures can be similar to that reported for plant species mixtures. Our study implies that appropriate agricultural management that enhances the mycorrhizal fungal contribution to ecosystem services may result in overyielding in yield or P uptake through mixing varieties of one crop species.</p>
Data from: Highly diverse and spatially heterogeneous mycorrhizal symbiosis in a rare epiphyte is unrelated to broad biogeographic or environmental features
Symbiotic interactions are common in nature. In dynamic or degraded environments, the ability to associate with multiple partners (i.e. broad specificity) may enable species to persist through fluctuations in the availability of any particular partner. Understanding how species interactions vary across landscapes is necessary to anticipate direct and indirect consequences of environmental degradation on species conservation. We asked whether mycorrhizal symbiosis by populations of a rare epiphytic orchid (Epidendrum firmum) is related to geographic or environmental heterogeneity. The latter would suggest that interactions are governed by environmental conditions rather than historic isolation of populations and/or mycorrhizal fungi. We used DNA-based methods to identify mycorrhizal fungi from eleven E. firmum populations in Costa Rica. We used molecular and phylogenetic analyses to compare associations. Epidendrum firmum exhibited broad specificity, associating with diverse mycorrhizal fungi, including six Tulasnellaceae molecular operational taxonomic units (MOTUs), five Sebacinales MOTUs and others. Notably, diverse mycorrhizal symbioses formed in disturbed pasture and roadside habitats. Mycorrhizal fungi exhibited significant similarity within populations (spatial and phylogenetic autocorrelation) and significant differences among populations (phylogenetic community dissimilarity). However, mycorrhizal symbioses were not significantly associated with biogeographic or environmental features. Such unexpected heterogeneity among populations may result from complex combinations of fine-scale environmental factors and macro-evolutionary patterns of change in mycorrhizal specificity. Thus, E. firmum exhibits broad specificity and the potential for opportunistic associations with diverse fungi. We suggest that these characteristics could confer symbiotic assurance when mycorrhizal fungi are stochastically available, which may be crucial in dynamic or disturbed habitats such as tropical forest canopies.
Differential responses of Medicago truncatula NLA homologs to nutrient deficiency and arbuscular mycorrhizal symbiosis
Open the record for dataset details and reuse information.
Data from: Mycorrhizal symbiosis pathway and edaphic fertility frame root economics space among tree species
<p><span>The root economics space (RES) is multidimensional and largely shaped by belowground biotic and abiotic influences. However, how root-fungal symbioses and edaphic fertility drive this complexity remains unclear. </span></p> <p><span>Here, we measured absorptive root traits of 112 tree species in temperate and subtropical forests of China, including traits linked to functional differences between arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) hosts. </span></p> <p><span>Our data, from known mycorrhizal tree species, revealed a 'fungal-symbiosis' dimension distinguishing AM from ECM species. This divergence likely resulted from the contrasting mycorrhizal evolutionary development of AM versus ECM associations. Increased root tissue cortical space facilitates AM symbiosis, whereas increased root branching favors ECM symbiosis. Irrespective of mycorrhizal type, a 'root-lifespan' dimension reflecting aspects of root construction cost and defense was controlled by variation in specific root length and root tissue density, which was fully independent of root nitrogen content. Within this function-based RES, we observed a substantial covariation of axes with soil phosphorus and nitrate levels, highlighting the role played by these two axes in nutrient acquisition and conservation. </span></p> <p><span>Overall, our findings demonstrate the importance of</span><span> evolved mycorrhizal symbiosis pathway and edaphic fertility in framing the </span><span>RES</span><span>, and</span> <span>provide theoretical and mechanistic insights into the complexity of root economics.</span></p>
Mycorrhizal symbiosis and phosphorus supply determine interactions among plants with contrasting nutrient-acquisition strategies
<p>Highly diverse plant communities growing on nutrient-impoverished soils are test beds for theories on species coexistence. Here, neighbouring mycorrhizal and non-mycorrhizal plants compete for limited phosphorus. The impact of belowground interactions on community dynamics is underexplored.</p> <p>We used an experimental approach to investigate effects of inoculation with arbuscular mycorrhizal (AM) fungi and a phosphorus supply gradient on competitive and facilitative interactions among mixed assemblages of woody plants in microcosms. The plant species, one cluster-root forming (CR) species and four AM species, are native to jarrah forest that grows on nutrient-impoverished soils in south-western Australia. We measured plant growth in microcosms, with and without inoculation with the AM fungus <i>Rhizophagus irregularis</i>,<i> </i>and across a gradient of P supply: 0, 9, 27, and 243 mg P per kg of soil.</p> <p>Our data show evidence of plant-plant facilitation at low P supply and competition at high P supply. Growth of the CR species, <i>Hakea undulata</i>, was highest in microcosms with 0P and without AM inoculation. One AM species, <i>Bossiaea aquifolium</i>, also performed better at lower P levels, possibly benefitting from P mobilised by <i>H. undulata</i>. The other three AM species, one strongly obligate, performed better at higher P levels. Data for <i>Acacia celastrifolia</i> suggested it was facultatively mycotropic, and because there was no correlation between AM colonisation and the relative inoculum effect, we suggest positive effects of AM inoculation at 9P might be due to benefits other than P-acquisition, such as pathogen defence. Benefit of AM inoculation diminished for three of four mycorrhizal species at the highest P-level as we had predicted. The fourth species, <i>Eucalyptus marginata</i> (jarrah), had higher growth in microcosms that were not inoculated with AM, perhaps because the species benefits more from ectomycorrhizas.</p> <p><i>Synthesis. </i>Our experimental data suggests spatial heterogeneity of soil P, coupled with a diversity of nutrient acquisition strategies, and plasticity among plant-plant and plant-AM fungi interactions, contributes to plant species coexistence in the nutrient-impoverished jarrah forest. Our research highlights the importance of belowground mechanisms for understanding factors determining community structure including a potential role of AM fungi in plant pathogen defence.</p>
Mycorrhizal symbiosis and phosphorus supply determine interactions among plants with contrasting nutrient-acquisition strategies
Open the record for dataset details and reuse information.
Data from: Highly diverse and spatially heterogeneous mycorrhizal symbiosis in a rare epiphyte is unrelated to broad biogeographic or environmental features
Open the record for dataset details and reuse information.
Data from: Mycorrhizal symbiosis pathway and edaphic fertility frame root economics space among tree species
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.