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8 results for “NanoSIMS”
Correlating NanoSIMS images with ultra-high resolution EM images in Look@NanoSIMS
<p>Supplement of the study by Spataro et al. (2022) describes how to perform correlative image analysis in Look@NanoSIMS. This repository contains files used as an example in that analysis.</p> <p>* Rat7SNR_21.tif = ultra-high resolution EM image (4096 x 3072 pixels)<br> * Spataro-Sept-2018_3.im.zip = zipped raw data produced by NanoSIMS 50L (256 x 256 pixels)<br> * Spataro-Sept-2018_3.zip = zipped folder containing data generated by Look@NanoSIMS</p> <p>To start the analysis, download all files to a folder on your computer (preferably in the same folder) and unzip the file Spataro-Sept-2018_3.zip. The latter step will create a folder Spataro-Sept-2018_3 containing files generated by Look@NanoSIMS when analysing data in Spataro-Sept-2018_3.im.zip and Rat7SNR_21.tif. The files include information about the alignment of individual planes (xyalign.mat), coordinates of the pairs of reference points in the EM and NanoSIMS images (points_10x.mat), regions of interest defined for the resampled (cells_10x.mat) and original NanoSIMS data (cells_1x.mat), and Look@NanoSIMS preferences saved for the resampled (prefs_10x.mat) and original (prefs_1x.mat and prefs.mat) NanoSIMS data. You can use these files to reproduce the analysis described in the Supplement of Spataro et al. (2022).</p> <p>Reference:</p> <p>S. Spataro, B. Maco, S. Escrig, L. Jensen, L. Polerecky, G. Knott, A. Meibom, and B. L. Schneider (2022). Alpha-synuclein-induced changes to neuronal metabolism revealed by stable isotope labeling and ultra-high-resolution imaging.</p>
Data from NanoSIMS analysis, software LANS_LeKieffre et al. 2020_ Proceedings B
<p>Data extracted from NanoSIMS analysis with the software <a href="mailto:Look@NanoSIMS">Look@NanoSIMS</a> (Polerecky et al. 2012). Different foraminiferal cytoplasmic compartments and the symbiotic dinoflagellates were analyzed for their 13C/12C and 15N/14N isotopic ratios. Three experiments were made: incubations with (1) 13C-bicarbonate and 15N-ammonium, (2) 13C-bicarbonate and 15N-nitrate, and (3) feeding with 13C- and 15N-labeled food. Details can be found in the manuscript:<br> LeKieffre C. et al. 2020. Ammonium is the preferred source of nitrogen for planktonic foraminifer and their dinoflagellate symbionts. Proceedings of the Royal Society B.</p>
Smimulated fungal metagenome dataset with Nanosim
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Data set for the article 'Gold-FISH enables targeted NanoSIMS analysis of plant-associated bacteria'
<p>This dataset contains data that support the manuscript</p> <p>Schmidt et al () "Gold-FISH enables targeted NanoSIMS analysis of plant-associated bacteria<em>", </em>The New Phytologist, accepted on 14.06.2023.</p> <p>It contains the following data:</p> <p>NanoSIMS imaging data, which was used for Fig. 2-3, as well as for Fig. S1-4. Data are provided as the original NanoSIMS images (.im) as well as their associated checkfiles (.chk_im).</p> <p> </p>
datasets of Pb-Pb Datingof Chang'e-5 Basalt using NanoSIMS
<p>The ions image and Pb-Pb data of CE5 basalt using NanoSIMS.</p>
Meta-NanoSim simulated saliva sample
<p>This dataset is described in Meta-NanoSim manuscript. </p> <p>Reference metagenome list and abundance levels are provided at the same time.</p> <p>The training model used is trained from Zymo Mock microbial community Log dataset.</p>
NanoSIMS raw data Folder 1
<p>Raw data from NanoSIMS</p>
Raw NanoSIMS data - DC06-05-94, DC06-07-18, DC06-04-43, DC16-14-309
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.