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ShareScore release 0.9.0
Dataset results
6 results for “Natural microbial communities”
Interspecific social interactions shape public goods production in natural microbial communities
<p>The R code (Hesse_etal.R) descibes step by step how metal polution affects the ecology and evolution of a community-wide public good – the production of metal-detoxifying siderophores. This code accompanies the manuscript "Interspecific interactions shape public goods production in natural microbial communities" (https://www.biorxiv.org/content/10.1101/710715v1).</p> <p>The R code is divided into different sections per figure (1-5 and supplementary Figure S1). Each section first starts with reading in the appropriate data files (cvs files) and continues with statistics and plotting of figures.</p>
Data from: Community composition and physiological plasticity control microbial carbon storage across natural and experimental soil fertility gradients
<p>Data associated with 'Community composition and physiological plasticity control microbial carbon storage across natural and experimental soil fertility gradients' by Butler, Manzoni, and Warren, published in The ISME Journal (accepted 28/9/2023).</p>
Data from: Assembling microbial communities: a genomic analysis of a natural experiment in neotropical bamboo internodes
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Data from: Seasonal and ontogenetic variation of skin microbial communities and relationships to natural disease dynamics in declining amphibians
Recently, microbiologists have focused on characterizing the probiotic role of skin bacteria for amphibians threatened by the fungal disease chytridiomycosis. However, the specific characteristics of microbial diversity required to maintain health or trigger disease are still not well understood in natural populations. We hypothesized that seasonal and developmental transitions affecting susceptibility to chytridiomycosis could also alter the stability of microbial assemblages. To test our hypothesis, we examined patterns of skin bacterial diversity in two species of declining amphibians (Lithobates yavapaiensis and Eleutherodactylus coqui) affected by the pathogenic fungus Batrachochytrium dendrobatidis (Bd). We focused on two important transitions that affect Bd susceptibility: ontogenetic (from juvenile to adult) shifts in E. coqui and seasonal (from summer to winter) shifts in L. yavapaiensis. We used a combination of community-fingerprinting analyses and 16S rRNA amplicon sequencing to quantify changes in bacterial diversity and assemblage composition between seasons and developmental stages, and to investigate the relationship between bacterial diversity and pathogen load. We found that winter-sampled frogs and juveniles, two states associated with increased Bd susceptibility, exhibited higher diversity compared with summer-sampled frogs and adult individuals. Our findings also revealed that hosts harbouring higher bacterial diversity carried lower Bd infections, providing support for the protective role of bacterial communities. Ongoing work to understand skin microbiome resilience after pathogen disturbance has the potential to identify key taxa involved in disease resistance.
Data from: Seasonal and ontogenetic variation of skin microbial communities and relationships to natural disease dynamics in declining amphibians
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Transcriptome analysis of LfeRT32a in its natural microbial community comparing the biofilm and planktonic modes of life
GEO Series GSE20267. Leptospirillum ferrooxidans. 2 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.