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90,313 results for “New Genus”
Aligned DNA sequence matrix for phylogenetic analyses in the article "Three new species of Torrent Treefrogs (Anura: Hylidae) of the Hyloscirtus bogotensis group from the eastern Andean slopes and the biogeographic history of the genus"
<p>Aligned DNA sequence matrix for phylogenetic analyses of the article "Three new species of Torrent Treefrogs (Anura: Hylidae) of the Hyloscirtus bogotensis group from the Amazon foothills and the biogeographic history of the genus"</p> <p>The matrix is in NEXUS format and has 3259 bp and 25 terminals.</p> <p>Partitions are as follows:</p> <div>charset 12S = 1-955;</div> <div>charset ND1_nonCoding1 = 956-1279;</div> <div>charset ND1_Pos1 = 1280-2240\3;</div> <div>charset ND1_Pos2 = 1281-2241\3;</div> <div>charset ND1_Pos3 = 1282-2242\3;</div> <div>charset ND1_nonCoding2 = 2243-2361;</div> <div>charset cmyc_Pos1 = 2362-2779\3;</div> <div>charset cmyc_Pos2 = 2363-2780\3;</div> <div>charset cmyc_Pos3 = 2364-2781\3;</div> <div>charset Rag1_Pos1 = 2782-3415\3;</div> <div>charset Rag1_Pos2 = 2783-3416\3;</div> <div>charset Rag1_Pos3 = 2784-3417\3;</div>
Supplement photos for paper: New genus Navipelta (Peltaspermales, Pteridospermae) from Permian-Triassic boundary of Moscow sineclise
<p>Additional images of ovuliferous organs <em>Navipelta </em>from the terrestrial deposits of the Nedubrovo locality (village of Nedubrovo, Vologda Region, Russia), belonging to the base of Vetlugian Group (Upper Permian–Lower Triassic)</p>
Evidence for Early Mesozoic diversification of Hypsimetopidae Nicholls, 1943 (Isopoda), with the description of a new genus from Andhra Pradesh and notes on threats to Indian cave environments
<p>Datafiles and scripts for https://doi.org/10.1093/jcbiol/ruac052</p> <p>Evidence for Early Mesozoic diversification of Hypsimetopidae Nicholls, 1943 (Isopoda), with the description of a new genus from Andhra Pradesh and notes on threats to Indian cave environments</p> <p>George D. F. Wilson1,2 and Shabuddin Shaik 3</p> <p>1 Saugatuck Natural History Laboratory, Saugatuck, MI, USA; gdfw@snhlab.com</p> <p>3 Department of Life Science, Central University of Karnataka, Kadaganchi, 585 367, India; shabu.biologist@gmail.com</p> <p>2 Corresponding author: George D. F. Wilson, P. O. Box 714, Saugatuck, Michigan 49453, USA. e-mail: gdfw@snhlab.com </p> <p>File List:</p> <p>Phreatoi20220525.nex <br> Mesquite data file that contains all data from the DELTA taxonomic database that were used for data presentation, organization, analysis, as well as trees resulting from all analyses. For Mesquite version 3.70; Maddison WP, Maddison DR. 2021. Mesquite: a modular system for evolutionary analysis. Version 3.6 University of British Columbia & Oregon State University., http://www.mesquiteproject.org/ <br> <br> The DELTA database is still being edited and changed so it is not included here<br> For DELTA, see website https://www.delta-intkey.com/<br> publications:<br> Dallwitz MJ. 1980. A general system for coding taxonomic descriptions. TAXON 29: 41-46.<br> Dallwitz MJ, Paine TA, Zurcher EJ. 2000. User's guide to the DELTA system: a general system for processing taxonomic descriptions. CSIRO: Canberra.</p> <p> <br> Phreatoi20220525.tnt - the TNT data file generated by Mesquite<br> Analyses were performed using TNT-64bit, version 1.5, Goloboff PA, Catalano SA. 2016. TNT version 1.5, including a full implementation of phylogenetic morphometrics. Cladistics 32: 221-238.<br> Note: TNT counts zero as a number so the first tree, taxon or k paramter is 0, the second is 1, the third is 2 and so on </p> <p>TNT Scripts were written or modified for this project by George D. F. Wilson. They were run using the console in Ubuntu 20.04 but should work using the console version of TNT in other operating systems available from http://www.lillo.org.ar/phylogeny/tnt/. I recommend using the console because it allows you do to multiple analysis with one script. </p> <p>Each script has a banner that explains what is being done. If this fails to appear the first time, enter n and restart the script</p> <p>These are easily modified in a text editor to change the analysis<br> -- tnt.run : standard run of tnt. <br> -- tnt-jacK.run : symmetric jackknife analysis with concavity parameter, select file, concavity and prob parameter <br> -- piwe_rangeK.run : A range of concavity parameters are selected at the beginning and run sequentially<br> -- setk_trans.run : Modified from setk.run by Salvador Arias, Instituto Miguel Lillo, San Miguel de Tucuman, Argentina<br> -- aquickie_bt1000.run : Modified from the standard script distributed with TNT with more iterations of jackknifing<br> <br> If you are new to using TNT, see the information available on http://www.lillo.org.ar/phylogeny/tnt/ as well as these articles:<br> Goloboff PA. 1993. Estimating character weights during tree search. Cladistics 9: 83-91.<br> Goloboff PA. 1997. Self-Weighted Optimization: Tree Searches and Character State Reconstructions under Implied Transformation Costs. Cladistics 13: 225-245.<br> Goloboff PA, Carpenter JM, Arias JS, Esquivel DRM. 2008. Weighting against homoplasy improves phylogenetic analysis of morphological data sets. Cladistics 24: 758-773.<br> Goloboff PA, Catalano SA. 2016. TNT version 1.5, including a full implementation of phylogenetic morphometrics. Cladistics 32: 221-238.<br> Goloboff PA, Farris JS. 2001. Methods for Quick Consensus Estimation. Cladistics 17: S26-S34.<br> Goloboff PA, Farris JS, Källersjö M, Oxelman B, Ramírez MJ, Szumik CA. 2003. Improvements to resampling measures of group support. Cladistics 19: 324-332.<br> Goloboff PA, Farris JS, Nixon KC. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24: 774-786.</p>
Aligned DNA sequence matrix for phylogenetic analyses in the article "A new glassfrog of the genus Centrolene (Amphibia: Centrolenidae) from the Subandean Kutukú Cordillera, eastern Ecuador"
<p>Aligned DNA sequence matrix for phylogenetic analyses of the article "A new glassfrog of the genus Centrolene (Amphibia: Centrolenidae) from the Subandean Kutukú Cordillera, eastern Ecuador"</p> <p>The matrix is in NEXUS format and has 6626 bp and 239 terminals.</p> <p>Partitions are as follows:</p> <div> <div>charset 12S = 1-967;</div> <div>charset 16S = 968-2130;</div> <div> </div> <div>charset BNDFcodonPos1 = 2133-2829\3;</div> <div>charset BNDFcodonPos2 = 2131-2830\3;</div> <div>charset BNDFcodonPos3 = 2132-2828\3;</div> <div> </div> <div> </div> <div>charset ND1codonPos1 = 2832-3786\3;</div> <div>charset ND1codonPos2 = 2833-3787\3;</div> <div>charset ND1codonPos3 = 2831-3788\3;</div> <div> </div> <div> </div> <div>charset CXCR4codonPos1 = 3790-4144\3;</div> <div>charset CXCR4codonPos2 = 3791-4142\3;</div> <div>charset CXCR4codonPos3 = 3789-4143\3;</div> <div> </div> <div> </div> <div>charset cmyccodonPos1 = 4145-4547\3;</div> <div>charset cmyccodonPos2 = 4146-4548\3;</div> <div>charset cmyccodonPos3 = 4147-4549\3;</div> <div> </div> <div> </div> <div>charset POMCcodonPos1 = 4551-5160\3;</div> <div>charset POMCcodonPos2 = 4552-5161\3;</div> <div>charset POMCcodonPos3 = 4550-5162\3;</div> <div> </div> <div> </div> <div>charset RAG1codonPos1 = 5163-5616\3;</div> <div>charset RAG1codonPos2 = 5164-5617\3;</div> <div>charset RAG1codonPos3 = 5165-5618\3;</div> <div> </div> <div> </div> <div>charset SLC8A1codonPos1 = 5620-6160\3;</div> <div>charset SLC8A1codonPos2 = 5621-6158\3;</div> <div>charset SLC8A1codonPos3 = 5619-6159\3;</div> <div> </div> <div> </div> <div> </div> <div>charset SLC8A3codonPos1 = 6162-6627\3;</div> <div>charset SLC8A3codonPos2 = 6163-6625\3;</div> <div>charset SLC8A3codonPos3 = 6161-6626\3;</div> </div> <p> </p>
Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean
<p>Data associated with the study "<em>Brilliantia kiribatiensis</em>, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean".</p> <p><strong>ITS.fasta, ITS_bmge.fasta, LSU.fasta, LSU_bmge.fasta, SSU.fasta, SSU_bmge.fasta: </strong>SSU rDNA, LSU rDNA and rDNA ITS sequences used in phylogenetic analyses. Sequences of Brilliantia kiribatiensis were added to updated phylogenetic datasets used previously (Leliaert et al. 2007a, Leliaert et al. 2009b), aligned in MAFFT v7.215 (Katoh and Standley 2013), and stripped of hypervariable sites in BMGE v1.1 (Criscuolo and Gribaldo 2010) by using the -h 0.4 -g 0.35 parameters. Alignments were visually checked and concatenated in Seaview v4.4.2.</p> <p><strong>concatenated_SSU_ITS_LSU.fasta</strong>: concatenated alignment with following partitions: SSU: 1-1797, ITS1+5.8S+ITS2: 1798-3335, LSU: 3336-3926.</p> <p><strong>Table_S1_sequence_sources.xls: </strong>GenBank accessions, sample isolate codes and sites of collection for sequences included in the concatenated phylogenetic data set.</p> <p><strong>Table S2. </strong>Percent cover of different algal groups in 1 m2 photoquadrats. Algal groups are identified to genus level for fleshy macroalgae or functional group for turf algae, branched red algae, crustose coralline algae, and cyanobacteria.</p> <p><strong>Table SX.</strong> Morphological measurements of <em>Brilliantia kiribatiensis</em>.</p>
Figs. 15-18. Cybaeodes avolensis, new species. 15. Left male palp, ventral view. 16. Same, retrolateral view. 17. Epigynum, ventral view. 18 in On The Relationships of the Spider Genus Cybaeodes (Araneae, Dionycha)
Figs. 15-18. Cybaeodes avolensis, new species. 15. Left male palp, ventral view. 16. Same, retrolateral view. 17. Epigynum, ventral view. 18. Same, dorsal view.
Figs. 21-24 in On Hesperocranum, A New Spider Genus from Western North America (Araneae, Liocranidae)
Figs. 21-24. Hesperocranum rothi, new species, male palp. 21. Prolateral view. 22. Retrolateral view. 23. Prolateral view of embolar region. 24. Ventral view.
Figs. 17-20 in On Hesperocranum, A New Spider Genus from Western North America (Araneae, Liocranidae)
Figs. 17-20. Hesperocranum rothi, new species, female. 17. Chelicerae and eye region, anterior view. 18. Eye region, dorsal view. 19. Epigynum, ventral view. 20. Posterior median spinnerets, anterior end towards top of photo. Original magnification = 700 x.
Figs. 1-7 in Two New Species Of The Genus Oedignatha Thorell (Araneae: Clubionidae) From Coastal Andhra Pradesh, India
Figs. 1-7. Oedignatha binoyii sp. novo 1. Dorsal view of female (legs omitted); 2. Epigyne; 3. Internal genitalia; 4. Right male palp - ventral view; 5. Right male palp - inner view; 6. Right male palp - outer view; 7. Right chelicera - ventral view
Figs. 19-22. 19, 20. Cybaeodes carusoi, new species. 21, 22. C. alicatai, new species. 19. Left male palp, ventral view. 20. Same, retrolateral view. 21. Epigynum, ventral view. 22 in On The Relationships of the Spider Genus Cybaeodes (Araneae, Dionycha)
Figs. 19-22. 19, 20. Cybaeodes carusoi, new species. 21, 22. C. alicatai, new species. 19. Left male palp, ventral view. 20. Same, retrolateral view. 21. Epigynum, ventral view. 22. Same, dorsal view.
Figs. 118–124 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 118–124. Trichorhina tropidocerata sp. nov., male: 118, pereopod VII; 119, pereopod I; 120, exopod of pleopod I; 121, endopod of pleopod I; 122, endopod of pleopod II; 123, exopod of pleopod II; 124, exopod of pleopod V. Scale bars: 0.1 mm
Figs. 101–107 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 101–107. Trichorhina sexdens sp. nov., male: 101, pereopod I; 102, pereopod VII; 103, exopod of pleopod I; 104, endopod of pleopod I; 105, endopod of pleopod II; 106, exopod of pleopod II; 107, exopod of pleopod V. Scale bars: Figs 101–107, 0.1 mm.
Figs. 95–100 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 95–100. Trichorhina sexdens sp. nov., male: 95, cephalothorax and four first pereonites, dorsal view; 96, cephalothorax, frontal view; 97, antenna; 98, left mandible; 99, exiteof maxillula; 100, maxilliped. Scale bars: Fig. 95, 1 mm; Fig. 96, 0.5 mm; Figs 97–100, 0.1 mm
Figs. 90–94 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 90–94. Trichorhina orensis sp. nov., male: 90, pereopod I; 91, pereopod VII; 92, endopod of pleopod I; 93, pleopod II; 94, exopod of pleopod V. Scale bars: Figs 90–94, 0.1 mm; arrowed details, 0.01 mm.
Figs. 79–89 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 79–89. Trichorhina orensis sp. nov. Female, habitus: 79, dorsal; 80, cephalothorax and two first pereonites, lateral view; 81, cephalothorax, frontal view. Male: 82, antenna; 83, fan-shaped scale-seta of pereonite; 84, nodulus lateralis; 85, antennula; 86, right mandible; 87, exite of maxillula; 88, maxilla; 89, maxilliped. Scale bars: Fig. 79, 1 mm; Figs 80–81, 0.5 mm; Figs 83–84, 0.01 mm; Figs 82, 85–89, 0.1 mm.
Figures 70–78 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figures 70–78. Trichorhina myrmecophila sp. nov. Male: 70, pereopod I; 71, pereopod VII. Female: 72, pereopod VII; 73, pereopod I. Male: 74, exopod of pleopod I; 75, endopod of pleopod I; 76, endopod of pleopod II; 77, exopod of pleopod II; 78, exopod of pleopod V. Scale bars: Figs 70–78, 0.1 mm; arrowed details, 0.01 mm
Figs. 58–69 in The genus Trichorhina Budde-Lund in Brazil, with description of seven new species (Isopoda, Oniscidea, Platyarthridae)
Figs. 58–69. Trichorhina myrmecophila sp. nov. Female, habitus: 58, dorsal; 59, cephalothorax and two first pereonites, lateral view; 60, cepha- lothorax, frontal view. Male: 61, antennula; 62, nodulus lateralis; 63, fan-shaped scale-seta of pereonite; 64, antenna; 65, left mandible; 66, right mandible; 67, exiteof maxillula; 68, maxilla; 69, maxilliped. Scale bars: Fig. 58, 1 mm; Figs 59–60, 0.5 mm; Figs 62–63, 0.01 mm; Figs 61, 64–69, 0.1 mm
Figs. 1-2. 1 in Two new species of the genus Chloropepla (Hemiptera: Pentatomidae: Pentatominae) from Brazil*)
Figs. 1-2. 1 – Chloropepla paveli sp. nov. (male holotype). 2 – C. stysi sp. nov. (male holotype). Scale bars = 2 mm.
Figs. 15-17. Female genitalia. 15 in Two new species of the genus Chloropepla (Hemiptera: Pentatomidae: Pentatominae) from Brazil*)
Figs. 15-17. Female genitalia. 15 – Chloropepla paveli sp. nov., genital plates. 16-17 – C. stysi sp. nov., female genitalia. 16 – genital plates; 17 – gonocoxites and gonapophyses of ninth segment and ectodermal genital ducts. Scale bars = 1 mm (aac – anterior annular crest; cs – capsula seminalis; ch – chitinellipsen; g9 – gonapophyses 9; gc8 – gonocoxites 8; gc9 – gonocoxites 9; la8 – laterotergites 8; la9 – laterotergites 9; pac – posterior annular crest; pco – pars communis; pi – pars intermedialis; tvi – thickening of vaginal intima; X – segment X).
Figs. 7-14. Male external and internal genitalia. 7-10 in Two new species of the genus Chloropepla (Hemiptera: Pentatomidae: Pentatominae) from Brazil*)
Figs. 7-14. Male external and internal genitalia. 7-10 – Chloropepla paveli sp. nov. 7 – right paramere, dorsal view; 8 – phallus, dorsal view; 9 – phallus, ventral view; 10 – phallus, lateral view. Scale bars = 0.5 mm. 11-14 – C. stysi sp. nov. 11 – right paramere, dorsal view; 12 – phallus, dorsal view; 13 – phallus, ventral view; 14 – phallus, lateral view. Scale bars = 1 mm (aa – articulatory apparatus; cj – conjuntiva; dsd – ductus seminis distalis; dsp – ductus seminis proximalis; pht – phallotheca; ppht I – processus phallothecae I; ppht II – processus phallothecae II; ve – vesica; vp – vesica collar process).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.