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33 results for “Noccaea”
De novo transcriptome assembly of hyperaccumulating Noccaea praecox
<p>Trinity de novo assembly for hyperaccumulating plant species Noccaea praecox (syn. Thlaspi praecox), Brassicaceae. The dataset includes annotations from SwissProt, Pfam, Rfam databases and information on transmembrane regions and signal peptide cleavage sites (annotated using BLAST, HMMER, infernal, tmHMM and signalP through Trinotate). Detailed information on the preprocessing, assembly, post-processing and annotations are described in the ReadMe file.</p> <p>Supplementary material for Bočaj, V., Pongrac, P., Fischer, S. <em>et al.</em> <em>De novo</em> transcriptome assembly of hyperaccumulating <em>Noccaea praecox</em> for gene discovery. <em>Sci Data</em> <strong>10</strong>, 856 (2023). <a href="https://doi.org/10.1038/s41597-023-02776-x">https://doi.org/10.1038/s41597-023-02776-x</a></p>
Noccaea root and soil metagenomes
<p>Datasets comprise metagenomic data of hyperaccumulating <em>Noccaea praecox</em> and <em>N. caerulescens</em> from bulk soil, rhizosphere, and root compartments.</p>
Untargeted leaf metabolomes of Noccaea praecox and N. caerulescens
<p>The dataset represents untargeted leaf metabolomes of Noccaea caerulescens from the un-polluted site Lokovec (Slovenia), N. praecox from the same site, and N. praecox from metal-enriched site Zerjav (Slovenia).</p>
Fig. 1 in Noccaea nepalensis, a new species from Nepal, and four new combinations in Noccaea (Brassicaceae)
Fig. 1. — Noccaea nepalensis Al-Shehbaz: A, plant; B, sepal; C, petal; D, median stamen; E, fruit and fruiting pedicel. (Polunin, Sykes & Williams 4199).
FIGURE 1. Noccaea klimesii. A. Plant. B. Fruit. C in Noccaea klimesii (Coluteocarpeae; Brassicaceae), a new species from Ladakh, India
FIGURE 1. Noccaea klimesii. A. Plant. B. Fruit. C. Seed. Drawn by Al-Shehbaz from the holotype, Klimeš 03-29-1 (MO-7010388).
FIGURE 5. Noccaea huber-morathii. A in Contributions to Turkish Flora: Taxonomic and distributional notes on the poorly known Noccaea (Brassicaceae) species
FIGURE 5. Noccaea huber-morathii. A. Seed shape and colour under LM; B. SEM general appearance of seed; C. SEM detail of testa surface; D. Type specimen (photo from: Herbarium WU, Institute of Botany, University of Vienna;http://herbarium.univie.ac.at/database/ detail.php?ID=462003).
FIGURE 3. Noccaea aptera. A in Contributions to Turkish Flora: Taxonomic and distributional notes on the poorly known Noccaea (Brassicaceae) species
FIGURE 3. Noccaea aptera. A. Seed shape and colour under LM; B. SEM general appearance of seed; C. SEM detail of testa surface; D. Habitus; E. Immature fruit; F. Mature fruit.
FIGURE 4. Noccaea tatianae. A in Contributions to Turkish Flora: Taxonomic and distributional notes on the poorly known Noccaea (Brassicaceae) species
FIGURE 4. Noccaea tatianae. A. Seed shape and colour under LM; B. SEM general appearance of seed; C. SEM detail of testa surface; D. Habitus; E. Mature fruit.
FIGURE 2. Noccaea versicolor. A in Contributions to Turkish Flora: Taxonomic and distributional notes on the poorly known Noccaea (Brassicaceae) species
FIGURE 2. Noccaea versicolor. A. Seed shape and colour under LM; B. SEM general appearance of seed; C. SEM detail of testa surface; D. Habitus; E. Immature fruit; F. Mature fruit.
FIGURE 3 in Noccaea birolmutlui, a New Crucifer Species from South West Anatolia, Turkey
FIGURE 3. Noccaea birolmutlui: A. Basal leaves; C. Cauline leaves; E. Fruits. N. ochroleuca: B. Basal leaves; D. Cauline leaves; F. Fruits.
FIGURE 2 in Noccaea birolmutlui, a New Crucifer Species from South West Anatolia, Turkey
FIGURE 2. General view of Noccaea birolmutlui and N. ochroleuca. A–B. N. birolmutlui C. N. ochroleuca
FIGURE 1 in Noccaea birolmutlui, a New Crucifer Species from South West Anatolia, Turkey
FIGURE 1. Phylogenetic tree of tribe Coluteocarpae based on the Bayesian analysis of the ITS data. Posterior probability values> 0.5 are shown at the nodes. Taxon names follow concept presented in BrassiBase (https://brassibase.cos.uniheidelberg.de/).
FIGURE 2 in Phylogenetic position, taxonomy, distribution, and conservation status of the rare and poorly-known Noccaea rosularis, the generic type of Masmenia (Brassicaceae)
FIGURE 2. Phylogenetic placement of Noccaea rosularis (Masmenia rosularis) in Tribe Coluteocarpeae, based on Bayesian analysis of ITS data. Posterior probability (PP) values> 0.5 are shown at nodes. Taxon names follow concept presented in Brassibase (https:// brassibase.cos.uni-heidelberg.de/).
FIGURE 4 in Phylogenetic position, taxonomy, distribution, and conservation status of the rare and poorly-known Noccaea rosularis, the generic type of Masmenia (Brassicaceae)
FIGURE 4. Fruit and seeds of Noccaea rosularis. A. Septum and seed position under light microscope (LM); B. Seed shape and colour under LM; C. SEM general appearance of seed; D. SEM detail of testa surface. Scale bars (A–B) = 1 mm.
FIGURE 3. Noccaea rosularis. A, D in Phylogenetic position, taxonomy, distribution, and conservation status of the rare and poorly-known Noccaea rosularis, the generic type of Masmenia (Brassicaceae)
FIGURE 3. Noccaea rosularis. A, D. Habit; B. Flowers; C. Basal leaves; E. Habitat; F. Fruit; G. Infructescence.
FIGURE 1 in A new species of Noccaea (Brassicaceae) from central Anatolia
FIGURE 1. Phylogenetic tree of the tribe Coluteocarpae based on the Bayesian analysis of the ITS data. Posterior probability values (P> 0.5) are shown at the nodes. Taxon names follow concept presented in BrassiBase (https://brassibase.cos.uniheidelberg.de/). ★ indicates the Meyer's segregates.
FIGURE 3. Noccaea atila-ocakii. A in A new species of Noccaea (Brassicaceae) from central Anatolia
FIGURE 3. Noccaea atila-ocakii. A General appearance of the seed. D Seed surface, N. antitaurica. B General appearance of the seed. E Seed surface, N. lilacina. C General appearance of the seed. F Seed surface.
FIGURE 2. Noccaea atila-ocakii. A Habit with flowers. B Habit with fruits. C Basal and cauline leaves. D in A new species of Noccaea (Brassicaceae) from central Anatolia
FIGURE 2. Noccaea atila-ocakii. A Habit with flowers. B Habit with fruits. C Basal and cauline leaves. D Fruits.
Fig. 27. Noccaea Moench. A in Typification of Edmond Boissier's Cruciferae (Brassicaceae) names enumerated in Flora Orientalis
Fig. 27. Noccaea Moench. A. Noccaea papyracea (Boiss.) Khosravi et al., Iraq; B. Noccaea griffithiana (Boiss.) F.K. Mey. ( Carpoceras griffithianum Boiss.) originating from the Bentham herbarium in K (p. 135); C. Noccaea caespitosa (Boiss.) Al-Shehbaz & Menke, Turkey. [A: I. Al-Shehbaz; B: http://specimens.kew.org/herbarium/K000484297 © Royal Botanic Gardens Kew; C: B. Özüdoǧru]
Data from: Demographic history of the trace metal hyperaccumulator Noccaea caerulescens (J. Presl and C. Presl) F. K. Mey. in Western Europe
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