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5 results for “Notebook documentation”
Figure 5 from: Bloom D, Thomer A, Vaidya G, Guralnick R, Russell L (2012) From documents to datasets: A MediaWiki-based method of annotating and extracting species observations in century-old field notebooks. ZooKeys 209: 235-253. https://doi.org/10.3897/zookeys.209.3247
Figure 5 - An example of how a location (Big Thompson Creek near Loveland), a date (Sunday, June 10, 1906), and a taxon (Cottonwood, genus Populus) are grouped from across multiple pages.
Figure 4 from: Bloom D, Thomer A, Vaidya G, Guralnick R, Russell L (2012) From documents to datasets: A MediaWiki-based method of annotating and extracting species observations in century-old field notebooks. ZooKeys 209: 235-253. https://doi.org/10.3897/zookeys.209.3247
Figure 4 - Editing a notebook page on Wikisource. This screenshot shows side-by-side transcription and wiki markup syntax.
Figure 2 from: Bloom D, Thomer A, Vaidya G, Guralnick R, Russell L (2012) From documents to datasets: A MediaWiki-based method of annotating and extracting species observations in century-old field notebooks. ZooKeys 209: 235-253. https://doi.org/10.3897/zookeys.209.3247
Figure 2 - Index page for Notebook #1. Each Index page corresponds to a multipage file. The Index page displays volume metadata and links to sections of the notebook, while also providing links out to each notebook page and color-coding to determine which pages have been already transcribed and proofed.
Figure 1 from: Bloom D, Thomer A, Vaidya G, Guralnick R, Russell L (2012) From documents to datasets: A MediaWiki-based method of annotating and extracting species observations in century-old field notebooks. ZooKeys 209: 235-253. https://doi.org/10.3897/zookeys.209.3247
Figure 1 - Web browser view of a scanned page of Henderson's journal displayed side-by-side with transcriptions and annotations using the MediaWiki Proofread Page extension.
Figure 3 from: Bloom D, Thomer A, Vaidya G, Guralnick R, Russell L (2012) From documents to datasets: A MediaWiki-based method of annotating and extracting species observations in century-old field notebooks. ZooKeys 209: 235-253. https://doi.org/10.3897/zookeys.209.3247
Figure 3 - Henderson's first sentence. "Boulder, Colo. July 28, 1905. Saw Say [sic] Phoebe and siskins, [American] Robins, [Northern] Flicker."
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.