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7 results for “Ochotona princeps”
Fecal glucocorticoid metabolite levels of American pika (Ochotona princeps) and habitat characteristics of their associated territories found in rock glaciers adjacent to Niwot Ridge and within Rocky Mountain National Park, 2018 - 2019.
To understand whether stress-associated hormones vary with metrics of habitat quality, we measured fecal glucocorticoid metabolite (FGM) levels in the American pika (Ochotona princeps), a small mammal with well-defined habitat (talus), that can vary in quality depending on the presence of rock ice features (RIFs). In 2018, we sampled pika scat from two types of RIFs: “active” rock glaciers thought to harbor subsurface ice recently, and “fossil” rock glaciers considered long devoid of subsurface ice (as classified by Janke 2005, 2007). Specifically, fecal pellets were collected from pika territories located in rock glaciers within eight sites along the Front Range of Colorado: four in Rocky Mountain National Park (2 active, 2 fossil) and four adjacent to Niwot Ridge (2 active, 2 fossil) (pika_fecal_glu_rg.aw.csv). To account for possible seasonal variation in pika FGM, scat samples were collected in the alpine spring and fall. To understand other influences of habitat quality on FGMs, we also measured fine-scale habitat differences between rock glaciers in 2019, including talus depth, clast size, and land cover metrics related to forage (pika_fecal_habitat_rg.aw.csv).
Data from: Phylogenomics of American pika (Ochotona princeps) lineage diversification
<p>Quaternary climate oscillations have profoundly influenced current species distributions. For many montane species, these fluctuations were a prominent driver in species range shifts, often resulting in intraspecific diversification, as has been the case for American pikas (<em>Ochotona princeps</em>). Range shifts and population declines in this thermally-sensitive lagomorph have been linked to historical and contemporary environmental changes across its western North American range, with previous research reconstructing five mitochondrial DNA lineages. Here, we paired genome-wide data (25,244 SNPs) with range-wide sampling to re-examine the number and distribution of intra-specific lineages, and investigate patterns of within- and among-lineage divergence and diversity. Our results provide genomic evidence of <em>O. princeps</em> monophyly, reconstructing six distinct lineages that underwent multiple rounds of divergence (0.809-2.81mya), including a new Central Rocky Mountain lineage. We further found evidence for population differentiation across multiple spatial scales, and reconstructed levels of standing variation comparable to those found in other small mammals. Overall, our findings demonstrate the influence of past glacial cycles on <em>O. princeps</em> lineage diversification, suggest that current subspecific taxonomy may need to be revisited, and provide an important framework for investigations of American pika adaptive potential in the face of anthropogenic climate change.</p>
Data from: Phylogenomics of American pika (Ochotona princeps) lineage diversification
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Physiological stress of American pika (Ochotona princeps) and associated habitat characteristics for Niwot Ridge, 2018 - 2019
Temporal variation in a metric of stress might signify changes in an organism’s internal or external environment, but spatial variation in stress response could also signify spatial variation in habitat quality. Any stress response to habitat quality can be complicated or modulated, however, by strategies like escape in space (e.g., animal movements) or time (e.g., seed banks) that allow access to different conditions. Spatial and temporal variation in response to potential stressors has received little study in wild animals, especially at scales appropriate for relating stress to specific habitat characteristics. Here, we use the American pika (Ochotona princeps), a highly territorial small mammal, to investigate stress response within and among territories. For individually territorial animals such as pika, differences in habitat quality should lead to differences in the levels of stress exhibited by territory owners. In this study, we indexed stress by measuring stress hormone metabolites in feces collected non-invasively from pika territories. Feces were collected from 20 territories every two weeks from June to September of 2018 (pika_fecal_glut.aw.data.csv). In 2019, habitat metrics were recorded at each territory (pika_fecal_glut_habitat.aw.data.csv).
Data from: Putative climate adaptation in American pikas (Ochotona princeps) is associated with copy number variation across environmental gradients
<p>Improved understanding of the genetic basis of adaptation to climate change is necessary for maintaining global biodiversity moving forward. Studies to date have largely focused on sequence variation, yet there is growing evidence that suggests that changes in genome structure may be an even more significant source of adaptive potential. The American pika (<em>Ochotona princeps</em>) is an alpine specialist that shows some evidence of adaptation to climate along elevational gradients, but previous work has been limited to single nucleotide polymorphism (SNP)-based analyses within a fraction of the species range. Here, we investigated the role of copy number variation underlying patterns of local adaptation in the American pika using genome-wide data previously collected across the entire species range. We identified 37-193 putative copy number variants (CNVs) associated with environmental variation (temperature, precipitation, solar radiation) within each of the six major American pika lineages, with patterns of divergence largely following elevational and latitudinal gradients. Genes associated (<em>n</em>=158) with independent annotations across lineages, variables, and/or CNVs had functions related to mitochondrial structure/function, immune response, hypoxia, olfaction, and DNA repair, some of which have been previously linked to putative high elevation and/or climate adaptation that may serve as important targets in future studies.</p>
Data from: Putative climate adaptation in American pikas (Ochotona princeps) is associated with copy number variation across environmental gradients
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Data from: Evidence of intraspecific adaptive variation in the American pika (Ochotona princeps) on a continental scale using a target enrichment and mitochondrial genome skimming approach
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