Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
8
datasets available to search
ShareScore release 0.9.0
Dataset results
8 results for “Ochromyscus”
Figure 7 in Phylogeny, biogeography, and integrative taxonomic revision of the Afro-Arabian rodent genus Ochromyscus (Muridae: Murinae: Praomyini)
Figure 7. Wireframe plots showing differences between species' mean shapes of the skull from dorsal, lateral, and ventral views (from top to bottom). The colour code is the same as in Figure 6.
Figure 8 in Phylogeny, biogeography, and integrative taxonomic revision of the Afro-Arabian rodent genus Ochromyscus (Muridae: Murinae: Praomyini)
Figure 8. Skull centroid size variation between and within the species. Violin plots represent kernel density estimates of intraspecific skull size distribution (drawn where the sample size was sufficient). The white circle shows the median point and the black box encloses the interquartile range.
Figure 4 in Phylogeny, biogeography, and integrative taxonomic revision of the Afro-Arabian rodent genus Ochromyscus (Muridae: Murinae: Praomyini)
Figure 4. Maximum likelihood phylogenetic tree (RAxML) inferred from the concatenated dataset of 66 577 loci (503 746 SNPs) genotyped by the ddRAD approach. Black dots show nodes with the maximum bootstrap support (BP = 100). Bars on the right side show delimitations of MOTUs from the branch-cutting of this ML tree and from the InfoMap clustering based on the co-ancestry matrix (shown in Fig. 5).
Figure 6 in Phylogeny, biogeography, and integrative taxonomic revision of the Afro-Arabian rodent genus Ochromyscus (Muridae: Murinae: Praomyini)
Figure 6. The scatterplot of bgPC scores. The large, filled points mark species' mean shapes, and small, open points are projections of individual shapes on to the axes. The projections of four holotype skull shapes are indicated by black points labelled by the respective names.
Figure 5 in Phylogeny, biogeography, and integrative taxonomic revision of the Afro-Arabian rodent genus Ochromyscus (Muridae: Murinae: Praomyini)
Figure 5. Co-ancestry matrix of Ochromyscus shown as a heat map. The scale indicates the proportion of the nearest neighbour loci. fineSTRUCTURE clusters are shown in grey and InfoMap clusters in black. The bars on the left correspond to MOTUs identified by the branch-cutting of the ML tree from concatenated ddRAD data (see also Fig. 4).
Figure 3 in Phylogeny, biogeography, and integrative taxonomic revision of the Afro-Arabian rodent genus Ochromyscus (Muridae: Murinae: Praomyini)
Figure 3. Distribution of genetic variability and taxonomic summary of the genus Ochromyscus. Different symbols show the distribution of three different species distinguished in this study: stars—O. yemeni, triangles—O. brockmani, circles—O. sp. 3 (=niveiventris; see text for more details); different colours show intraspecific mtDNA variability. Names of mtDNA clades correspond to Figure 2. Background colours represent the predicted distribution of O. ('Myomyscus') brockmani (blue) and O. ('Myomyscus') yemeni (green) according to the IUCN Red List. Dashed lines encompass clusters of genomically similar specimens identified by InfoMap based on ddRAD data, with corresponding suggested species names. Note that the populations with mtDNA of the 'Arero' and 'Uganda' clades were not included in the ddRAD analysis, but we assigned them to O. sp. 3 (=niveiventris) based on their morphology (see text for more details). Similarly, no samples of O. yemeni were available for the genomic analysis. The inset photo shows a picture of rocky habitats, typical for Ochromyscus in eastern Ethiopia.
Figure 2 in Phylogeny, biogeography, and integrative taxonomic revision of the Afro-Arabian rodent genus Ochromyscus (Muridae: Murinae: Praomyini)
Figure 2. Bayesian phylogenetic tree of Ochromyscus calculated in MrBayes, based on mitochondrial Cytb sequences. The tree was rooted by the sequence of Mastomys awashensis. The topology of the main Ochromyscus clades was very similar in ML analysis in RAxML, but the monophyly of the genus was supported only in MrBayes (PP = 1.00). Black dots indicate posterior probability support>0.95 and ML bootstrap support>75; lower values are shown by numbers.
Figure 1 in Phylogeny, biogeography, and integrative taxonomic revision of the Afro-Arabian rodent genus Ochromyscus (Muridae: Murinae: Praomyini)
Figure 1. Compilation of previous taxonomic and distributional data of Ochromyscus. Background colours represent distribution reported by IUCN Red List for O. ('Myomyscus') brockmani (blue) and O. ('Myomyscus') yemeni (green), downloaded on 31 May 2021. Blue dots show records of O. ('Myomyscus') brockmani from GBIF.org (31 May 2021) GBIF Occurrence Download https://doi.org/10.15468/dl.93ynrv, combined with additional published data from Sudan (Happold 1966), Ethiopia (Yalden et al. 1976), Somalia (Corti et al. 1999), and unpublished data based on vouchers in NHM London (from Somaliland) and MNHN (from Somalia). Green dots represent documented records of O. ('Myomyscus') yemeni from GBIF.org (31 May 2021) GBIF Occurrence Download https://doi.org/10.15468/dl.zfj6yh, combined with additional published data from Nader et al. (1983), Sanborn and Hoogstraal (1953), and Büttiker and Harrison (1982) and two vouchers in MNHN Paris (from Saudi Arabia). Red stars show type localities and available names for species of the genus Ochromyscus. Small yellow circles are localities, from which we collected the genetic data.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.