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40 results for “Oodes”
Shapetastic OOD
<p>This dataset was created with the Shapetastic generator and has multiple partitions as follows.</p> <p>First, a partition with 50k grayscale images with a white background and black shapes drawn from each of the five available shapes, where the outline varies in width and is always gray.</p> <p>Second, a partition with 50k images similar to the previous, except that colors of both background and shapes are randomly selected from a color palette comprising 148 colors.<br>Again, the outline varies in width, but this time always in the interpolated color between the background and the color of the shape.<br>With this partition, we can for instance assess the impact of the presence of colors compared to the grayscale images.</p> <p>Third, a partition with 60k grayscale images with a white background and black elongated rectangles, ellipses, and parallelograms where the outline varies in width and is always gray.<br>Here, the focus lies on more fine-grained rotations every five degrees between 0 and 180 degrees.<br>We needed to constrain some parameters to make sure the shapes were oriented according to the ground truth, which is for instance not possible if we would include polygons and stars.<br>This partition allows us to unveil a bias in the methods that is rooted in the predominant edge orientation of the image.</p> <p>Each of these partitions have a resolution of 200x200 pixels.</p> <p> </p> <p>Last, two partitions that each contain 50k images of 5 different shapes without interpolations at the outlines. One dataset was generated directly with 32x32 pixels while the other was generated with 64x64 pixels. These partitions allow us to investigate any side effects of resizing to 32x32 pixels.</p>
2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning: Slices OOD (reference reconstructions and segmentations)
<p>This upload contains the reference reconstructions and segmentation of the out-of-distribution slices (OOD) from the data collection described in</p> <p>Maximilian B. Kiss, Sophia B. Coban, K. Joost Batenburg, Tristan van Leeuwen, and Felix Lucka “"2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning", <a href="https://doi.org/10.1038/s41597-023-02484-6"><em>Sci Data</em> <strong>10</strong>, 576 (2023)</a> or <a href="https://arxiv.org/abs/2306.05907">arXiv:2306.05907 (2023)</a></p> <p>Abstract:<br> "Recent research in computational imaging largely focuses on developing machine learning (ML) techniques for image reconstruction, which requires large-scale training datasets consisting of measurement data and ground-truth images. However, suitable experimental datasets for X-ray Computed Tomography (CT) are scarce, and methods are often developed and evaluated only on simulated data. We fill this gap by providing the community with a versatile, open 2D fan-beam CT dataset suitable for developing ML techniques for a range of image reconstruction tasks. To acquire it, we designed a sophisticated, semi-automatic scan procedure that utilizes a highly-flexible laboratory X-ray CT setup. A diverse mix of samples with high natural variability in shape and density was scanned slice-by-slice (5000 slices in total) with high angular and spatial resolution and three different beam characteristics: A high-fidelity, a low-dose and a beam-hardening-inflicted mode. In addition, 750 out-of-distribution slices were scanned with sample and beam variations to accommodate robustness and segmentation tasks. We provide raw projection data, reference reconstructions and segmentations based on an open-source data processing pipeline."</p> <p>The data collection has been acquired using a highly flexible, programmable and custom-built X-ray CT scanner, the FleX-ray scanner, developed by <a href="https://info.tescan.com/micro-ct">TESCAN-XRE NV,</a> located in the FleX-ray Lab at the <a href="https://www.cwi.nl/en/">Centrum Wiskunde & Informatica (CWI)</a> in Amsterdam, Netherlands. It consists of a cone-beam microfocus X-ray point source (limited to 90 kV and 90 W) that projects polychromatic X-rays onto a 14-bit CMOS (complementary metal-oxide semiconductor) flat panel detector with CsI(Tl) scintillator (Dexella 1512NDT) and 1536-by-1944 pixels, <span class="math-tex">\(74.8\mu m^2\)</span> each. To create a 2D dataset, a fan-beam geometry was mimicked by only reading out the central row of the detector. Between source and detector there is a rotation stage, upon which samples can be mounted. The machine components (i.e., the source, the detector panel, and the rotation stage) are mounted on translation belts that allow the moving of the components independently from one another.</p> <p>Please refer to the paper for all further technical details.</p> <p>The complete dataset can be found via the following links: <a href="https://doi.org/10.5281/zenodo.8014758">1-1000</a>, <a href="https://doi.org/10.5281/zenodo.8014766">1001-2000</a>, <a href="https://doi.org/10.5281/zenodo.8014787">2001-3000</a>, <a href="https://doi.org/10.5281/zenodo.8014829">3001-4000</a>, <a href="https://doi.org/10.5281/zenodo.8014874">4001-5000</a>, <a href="https://doi.org/10.5281/zenodo.8014907">OOD</a>.<br> The reference reconstructions and segmentations can be found via the following links: <a href="https://doi.org/10.5281/zenodo.8017583">1-1000</a>, <a href="https://doi.org/10.5281/zenodo.8017604">1001-2000</a>, <a href="https://doi.org/10.5281/zenodo.8017612">2001-3000</a>, <a href="https://doi.org/10.5281/zenodo.8017618">3001-4000</a>, <a href="https://doi.org/10.5281/zenodo.8017624">4001-5000</a>, <a href="https://doi.org/10.5281/zenodo.8017653">OOD</a>.</p> <p>The corresponding Python scripts for loading, pre-processing, reconstructing and segmenting the projection data in the way described in the paper can be found on <a href="https://github.com/mbkiss/2DeteCTcodes">github</a>. A machine-readable file with the used scanning parameters and instrument data for each acquisition mode as well as a script loading it can be found on the GitHub repository as well.</p> <p>Note: It is advisable to use the graphical user interface when decompressing the .zip archives. If you experience a zipbomb error when unzipping the file on a Linux system rerun the command with the UNZIP_DISABLE_ZIPBOMB_DETECTION=TRUE environment variable by setting in your .bashrc “export UNZIP_DISABLE_ZIPBOMB_DETECTION=TRUE”.</p> <p>For more information or guidance in using the data collection, please get in touch with</p> <p> Maximilian.Kiss [at] cwi.nl</p> <p> Felix.Lucka [at] cwi.nl</p>
2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning: Slices OOD
<p>This upload contains the out-of-distribution slices (OOD) from the data collection described in</p> <p>Maximilian B. Kiss, Sophia B. Coban, K. Joost Batenburg, Tristan van Leeuwen, and Felix Lucka “"2DeteCT - A large 2D expandable, trainable, experimental Computed Tomography dataset for machine learning", <a href="https://doi.org/10.1038/s41597-023-02484-6"><em>Sci Data</em> <strong>10</strong>, 576 (2023)</a> or <a href="https://arxiv.org/abs/2306.05907">arXiv:2306.05907 (2023)</a></p> <p>Abstract:<br> "Recent research in computational imaging largely focuses on developing machine learning (ML) techniques for image reconstruction, which requires large-scale training datasets consisting of measurement data and ground-truth images. However, suitable experimental datasets for X-ray Computed Tomography (CT) are scarce, and methods are often developed and evaluated only on simulated data. We fill this gap by providing the community with a versatile, open 2D fan-beam CT dataset suitable for developing ML techniques for a range of image reconstruction tasks. To acquire it, we designed a sophisticated, semi-automatic scan procedure that utilizes a highly-flexible laboratory X-ray CT setup. A diverse mix of samples with high natural variability in shape and density was scanned slice-by-slice (5000 slices in total) with high angular and spatial resolution and three different beam characteristics: A high-fidelity, a low-dose and a beam-hardening-inflicted mode. In addition, 750 out-of-distribution slices were scanned with sample and beam variations to accommodate robustness and segmentation tasks. We provide raw projection data, reference reconstructions and segmentations based on an open-source data processing pipeline."</p> <p>The data collection has been acquired using a highly flexible, programmable and custom-built X-ray CT scanner, the FleX-ray scanner, developed by <a href="https://info.tescan.com/micro-ct">TESCAN-XRE NV,</a> located in the FleX-ray Lab at the <a href="https://www.cwi.nl/en/">Centrum Wiskunde & Informatica (CWI)</a> in Amsterdam, Netherlands. It consists of a cone-beam microfocus X-ray point source (limited to 90 kV and 90 W) that projects polychromatic X-rays onto a 14-bit CMOS (complementary metal-oxide semiconductor) flat panel detector with CsI(Tl) scintillator (Dexella 1512NDT) and 1536-by-1944 pixels, <span class="math-tex">\(74.8\mu m^2\)</span> each. To create a 2D dataset, a fan-beam geometry was mimicked by only reading out the central row of the detector. Between source and detector there is a rotation stage, upon which samples can be mounted. The machine components (i.e., the source, the detector panel, and the rotation stage) are mounted on translation belts that allow the moving of the components independently from one another.</p> <p>Please refer to the paper for all further technical details.</p> <p>The complete dataset can be found via the following links: <a href="https://doi.org/10.5281/zenodo.8014758">1-1000</a>, <a href="https://doi.org/10.5281/zenodo.8014766">1001-2000</a>, <a href="https://doi.org/10.5281/zenodo.8014787">2001-3000</a>, <a href="https://doi.org/10.5281/zenodo.8014829">3001-4000</a>, <a href="https://doi.org/10.5281/zenodo.8014874">4001-5000</a>, <a href="https://doi.org/10.5281/zenodo.8014907">OOD</a>.<br> The reference reconstructions and segmentations can be found via the following links: <a href="https://doi.org/10.5281/zenodo.8017583">1-1000</a>, <a href="https://doi.org/10.5281/zenodo.8017604">1001-2000</a>, <a href="https://doi.org/10.5281/zenodo.8017612">2001-3000</a>, <a href="https://doi.org/10.5281/zenodo.8017618">3001-4000</a>, <a href="https://doi.org/10.5281/zenodo.8017624">4001-5000</a>, <a href="https://doi.org/10.5281/zenodo.8017653">OOD</a>.</p> <p>The corresponding Python scripts for loading, pre-processing, reconstructing and segmenting the projection data in the way described in the paper can be found on <a href="https://github.com/mbkiss/2DeteCTcodes">github</a>. A machine-readable file with the used scanning parameters and instrument data for each acquisition mode as well as a script loading it can be found on the GitHub repository as well.</p> <p>Note: It is advisable to use the graphical user interface when decompressing the .zip archives. If you experience a zipbomb error when unzipping the file on a Linux system rerun the command with the UNZIP_DISABLE_ZIPBOMB_DETECTION=TRUE environment variable by setting in your .bashrc “export UNZIP_DISABLE_ZIPBOMB_DETECTION=TRUE”.</p> <p>For more information or guidance in using the data collection, please get in touch with</p> <p> Maximilian.Kiss [at] cwi.nl</p> <p> Felix.Lucka [at] cwi.nl</p>
FIGURE 31. Nothoodes longus Andrewes, 1940 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 31. Nothoodes longus Andrewes, 1940 (A–H: male paratype; I–J: male specimen, India, Dibrugarh). A, I: habitus; B: mentum; C: prosternal process; D: right metepisternum and metacoxa (arrow shows lateral end of metacoxal basal sulcus); E: median lobe of aedeagus, left lateral view; F: same, anterior dorsal view; G: same, ventral view; H: same, posterior dorsal view; J: head and pronotum. Scale lines = 2 mm (Figs A, I); = 0.5 mm (Figs B–C, E–H); = 1 mm (Figs D, J).
FIGURE 32. Nothoodes taprobanae Andrewes, 1923, female paratype. A in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 32. Nothoodes taprobanae Andrewes, 1923, female paratype. A: habitus, with left antennomeres 6–11 attached to separate cardboard; B: mentum; C: prosternal process; D: left metepisternum and metacoxa (arrow shows lateral end of metacoxal basal sulcus); E: spermathecal complex and gonocoxites, ventral view. Scale lines = 2 mm (Fig. A); = 0.5 mm (Figs B–E).
FIGURE 30 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 30. Nothoodes bharat sp. n. (A–D: holotype; E–F: female paratype, Dwarakapuram Village; G: female paratype, Bangalore). A: median lobe of aedeagus, left lateral view; B: same, ventral view; C: same, anterior dorsal view; D: same, anterior dorsal view; E: left gonocoxite, ventral view; F–G: spermathecal complex and gonocoxites, ventral view (sg and ov missing on Fig. 30F). Scale lines = 0.5 mm (Figs A–D, F–G); = 0.2 mm (Fig. E).
FIGURE 29 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 29. Nothoodes bharat sp. n. (A–C: holotype; D: male paratype, Dwarakapuram Village; E–G: female paratype, Dwarakapuram Village). A: habitus and labels; B: head and pronotum; C: mentum; D: right protarsomeres; E: habitus; F: prosternal process; G: left metepisternum and metacoxa (left arrow shows lateral end of metacoxal basal sulcus, right one shows setiferous puncture of metatrochanter). Scale lines = 2 mm (Figs A, E); = 1 mm (Figs B, D, G); = 0.5 mm (Figs C, F).
FIGURE 27. Nothoodes angustatus Lorenz, 1998 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 27. Nothoodes angustatus Lorenz, 1998 (A–F: male specimen, Nepal, Siddharthanagar; G: female specimen, Nepal, 8 km NE Nepalgunj). A, G: habitus (arrow shows position of right basal setiferous puncture of pronotum); B: labium, with emphasis to mentum; C: labium, with emphasis to submentum, seen from the rear (white spots show locations of submental setiferous punctures); D: prosternal process (arrow shows place of disappearance of bordering); E: right metepisternum and metacoxa (arrow shows lateral end of metacoxal basal sulcus); F: abdominal ventrites (III–VI—number of respective ventrites; arrow shows position of ambulatory seta of ventrite III). Scale lines = 2 mm (Figs A, G); = 0.5 mm (Figs B–D); = 1 mm (Figs E–F).
FIGURE 26 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 26. Oodes japonicus (Bates, 1873) (A–B: male specimen, Japan, Shizuoka Pref., Iwata-shi, Tsurugaike; C–D: male specimen, Laos, Phou Pan Mt.; E–F: female specimen, Japan, Ibaraki Prefecture, Tsukuba City env.; G: female specimen, same locality). A, C: median lobe of aedeagus, left lateral view; B, D: same, dorsal view; E: left gonocoxite, ventral view; F: spermathecal complex and gonocoxites, dorsal view; G: spermathecal complex and gonocoxites, ventral view. Scale lines = 0.5 mm (Figs A–D, F–G); = 0.2 mm (Fig. E).
FIGURE 24. Oodes desertus Motschulsky, 1858 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 24. Oodes desertus Motschulsky, 1858 (A–D: male specimen, Japan, Niigata Pref., Katamachi; E–F: female specimen, Japan, Ibaraki Prefecture, Tsukuba City env.; G: female specimen, same locality). A: mentum; B: prosternal process; C: median lobe of aedeagus, left lateral view; D: same, dorsal view; E: left gonocoxite, ventral view; F: spermathecal complex and gonocoxites, dorsal view (ov and terminal part of smc missing); G: spermathecal complex and gonocoxites, ventral view. Scale lines = 0.5 mm (Figs A–D, F–G); = 0.2 mm (Fig. E).
FIGURE 25 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 25. Oodes japonicus (Bates, 1873) (A–C: male specimen, Japan, Shizuoka Pref., Iwata-shi, Tsurugaike; D: female specimen, same locality; E–F: male specimen, Laos, Phou Pan Mt.). A, D: habitus; B, E: mentum (white spots on Fig. 25E show locations of submental setiferous punctures); C: right metepisternum and metacoxa (arrow shows lateral end of metacoxal basal sulcus); F: prosternal process (arrows show interruptions of prosternal process bordering). Scale lines = 2 mm (Figs A, D); = 0.5 mm (Figs B, E–F); = 1 mm (Fig. C).
FIGURE 28. Nothoodes angustatus Lorenz, 1998 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 28. Nothoodes angustatus Lorenz, 1998 (A–D: male specimen, "Bengale Jungle de Mohrbunj"; E–F: female specimen, Nepal, Siddharthanagar). A: median lobe of aedeagus, lateral view; B: same, ventral view; C: same, posterior dorsal view; D: same, anterior dorsal view; E: left gonocoxite, ventral view; F: spermathecal complex and gonocoxites, ventral view. Scale lines = 0.5 mm (Figs A–D, F); = 0.2 mm (Fig. E).
FIGURE 21. Oodes gracilis A. Villa & G.B. Villa, 1833 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 21. Oodes gracilis A. Villa & G.B. Villa, 1833 (A–B: neotype and its labels; C–D: female specimen, Bulgaria, Pomorie-See; E–G: male specimen, Albania, Mali i Tabaroshit). A, C: habitus; B: left protarsomeres; D: pronotum and head; E: mentum; F: prosternal process; G: left metepisternum and metacoxa (arrow shows lateral end of metacoxal basal sulcus). Scale lines = 2 mm (Figs A, C); = 0.5 mm (Figs B, D, F–G); = 0.2 mm (Fig. E).
FIGURE 22. Oodes gracilis A. Villa & G.B. Villa, 1833 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 22. Oodes gracilis A. Villa & G.B. Villa, 1833 (A–B: neotype; C: male specimen, Bulgaria, Dragoman Marsh; D–E: male specimen, Bulgaria, Srebarna Lake; F–G: female specimens, Bulgaria, Dragoman Marsh). A, C: median lobe of aedeagus, left lateral view; B, D: same, dorsal view; E: same, ventral view; F: left gonocoxite, ventral view; G: spermathecal complex and gonocoxites, ventral view. Scale lines = 0.5 mm (Figs A–E, G); = 0.2 mm (Fig. F).
FIGURE 23. Oodes desertus Motschulsky, 1858 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 23. Oodes desertus Motschulsky, 1858 (A–D: Oodes desertus Motschulsky, 1858, lectotype and its labels; E–F: Oodes hahni Reitter, 1908, lectotype and its labels). A, E: habitus; B: left metepisternum and metacoxa; C: left mesotarsomeres 1–5, inner side; D: left metatarsomeres 1–3, outer side; F: right mesotarsomeres, inner side. Scale lines = 2 mm (Figs A, E); = 1 mm (Figs B–D); = 0.5 mm (Fig. F).
FIGURE 20. Oodes integer Semenov, 1889 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 20. Oodes integer Semenov, 1889, Russia, Primorski Kraj, Kommisarovka River (A–B: male specimen; C–H: female specimen). A, C: habitus B: pronotum and head; D: mentum; E: prosternal process; F: left metepisternum and metacoxa (arrow shows lateral end of metacoxal basal sulcus); G: left gonocoxite, ventral view; H: spermathecal complex and gonocoxites, ventral view. Scale lines = 2 mm (Figs A, C); = 1 mm (Figs B, D, F); = 0.5 mm (Figs E, H); = 0.2 mm (Fig. G).
FIGURE 17 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 17. Oodes echigonus Habu & Baba, 1960 (A–B: topotype male specimen, Japan, Niigata Pref., Katamachi; C–D: male specimen, China, imprecise locality; E–F: topotype female specimen, same locality as in the male topotype). A, C: median lobe of aedeagus, left lateral view; B: same, dorsal view; D: same, ventral view; E: left gonocoxite, ventral view; F: spermathecal complex and gonocoxites, ventral view. Scale lines = 0.5 mm (Figs A–D, F); = 0.2 mm (Fig. E).
FIGURE 15 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 15. Sundaoodes kalimantanensis sp. n. (A, C–D, G–H: holotype; B, E–F, I–K: paratype). A: habitus and labels; B: habitus; C: head and pronotum; D: mentum (white spots show locations of submental setiferous punctures); E: prosternal process; F: left metepisternum and metacoxa; G: median lobe of aedeagus, left lateral view; H: same, anterior half, dorsal view; I: left gonocoxite, ventral view; J: spermathecal complex and gonocoxites, dorsal view; K: same, ventral view. Scale lines = 2 mm (Figs A–B); = 1 mm (Figs C, F); = 0.5 mm (Fig. D–E, G–H, J–K); = 0.2 mm (Fig. I).
FIGURE 19 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 19. Oodes helopioides (Fabricius, 1792) (A–B: Oodes thessalonicensis Schatzmayr, 1909, lectotype; C–D: male specimen, Bulgaria, Veleka River outfall; E–F: male specimen, Bulgaria, Srebarna Lake; G: female specimen, same locality; H: female specimen, same locality). A, E: median lobe of aedeagus, left lateral view; B–C: same, anterior dorsal view; D: same, posterior dorsal view; F: same, ventral view; G: left gonocoxite, ventral view; H: spermathecal complex and gonocoxites, ventral view. Scale lines = 0.5 mm (Figs A–F, H); = 0.2 mm (Fig. G).
FIGURE 13 in Revision of the Palaearctic and Oriental representatives of Lachnocrepis LeConte and Oodes Bonelli (Coleoptera: Carabidae), with special account on Chinese species
FIGURE 13. Pseudoodes tianlinensis sp. n., holotype. A: habitus and labels; B: head and pronotum; C: mentum; D: prosternal process; E: left metepisternum and metacoxa; F: median lobe of aedeagus, left lateral view; G: same, dorsal view. Scale lines = 2 mm (Fig. A); = 1 mm (Figs B, E); = 0.5 mm (Figs C–D, F–G).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
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OpenNeuro
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