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Dataset results
62 results for “Open Research Data”
Cayla et al., 2020, Wellcome Open Research - Underlying data
<p>Underlying dataset for the identifications of low-complexity regions (LCRs) in the proteome of Trypanosoma brucei.</p> <p>- Supplement File 2.xlsx (Position of every InterPro domain and LCR identified. All genes are provided with indication on chromosome localisation, presence of transmembrane domains, signal peptides and the localisation of the encoded proteins, either predicted using DeepLoc<sup>37</sup> or observed (Tryptag<sup>38</sup>)).</p> <p>- Supplement File 3.xlsx (List of genes and Molecular Function gene ontology (GO) enrichment analysis of proteins with predicted LCRs in the N-terminal, central part or C-terminal or the different possible combinations.)</p> <p>- Supplement File 4.xlsx (Property analysis of sequences of every InterPro and LCRs identified.)</p> <p>- Supplement File 5.xlsx (List of genes and Molecular GO enrichment analysis of proteins presenting a Low (<8) or High (>9) polarity index level.)</p> <p>- Supplement File 6.xlsx (List and position of PTMs present on InterPro domains and LCRs. The different datasets from which the PTMs have been extracted can be found in the Zhang2020, Benz2019, Cayla2019, Urbaniak2013, Ooi2020, Fisk2012, Lott2012 and Moretti2017<sup>12,13,15,17–19,27,28</sup> columns. The sequence properties of the domains/LCRs on which these PTMs are located are also indicated. The list of modifications identified in Ooi <em>et al.</em> 2020<sup>28</sup> present on LCRs are indicated in the second sheet.)</p> <p>- Supplement File 7.xlsx (List and position of LCRs, signal peptides and their overlap.)</p>
Global Naturalized Alien Flora (GloNAF). Open access data to support research on understanding global plant invasions.
<p>This dataset is a snapshot of the Global Naturalized Alien Flora (GloNAF) database, version 2.02. GloNAF is a continuously updated, curated compilation of alien naturalized vascular plant inventories for geographic regions from around the world. The dataset has 16,429 unique taxa reported as naturalized or invasive and covers 1,343 regions (including 427 islands) from 336 data sources. For each region, the status (invasive, naturalized) is provided as listed in the original source. We provide the scientific names included with the original data source, and the matching accepted name or synonym of the taxon as given in the World Checklist of Vascular Plants (WCVP) Version 12. In addition, we provide an ESRI shapefile of polygons for each region. We also provide several variables that can be used to filter the data according to quality and completeness of alien taxon lists, which vary among the combinations of regions and data sources.</p> <p>The 'glonaf_flora2.csv' file lists the IDs ('taxon_wcvp_id') of all naturalized taxa contained in GloNAF and the regions they occur in. The 'glonaf_taxon_wcvp.csv' lists the original taxon names provided in the source data along with the corresponding accepted taxon name from the WCVP (version 12) for all alien taxa in GloNAF, regardless of their naturalization status. To link taxon names with naturalization records, join the 'id' column of the 'glonaf_taxon_wcvp.csv' file to the 'taxon_wcvp_id' column in 'glonaf_flora2.csv' . Additional information regarding the original source of the data ('glonaf_reference.csv'), specific attributes of the taxon lists ('glonaf_list.csv') and the region ('glonaf_region.csv') can also be joined similarly to 'glonaf_flora2.csv '. </p> <p> </p>
EMB3Rs Open digital research data
<p>The EMB3Rs Unified Modelling Platform is a tool to assist on modelling the recovery of excess heat and its reuse to meet final energy demand within and beyond the boundaries of industrial sites. The tool consists of a knowledge base and several simulation modules.<br> This database comprises the research data generated in the course of the EMB3Rs project by using the EMB3Rs platform.<br> The pdf file contains the detailed description of the database content</p> <p>It has been deposited at Zenodo’s open data repository with DOI 10.5281/zenodo.7994255.</p>
Research Data of the 2014 Census of Open Access Repositories in Germany, Austria and Switzerland
<p>The "2014 Census of Open Access Repositories in Germany, Austria and Switzerland” (2014 Census) is a study on the green open access landscape conducted in the course of a project seminar at the Berlin School of Library and Information Science (BSLIS) at Humboldt-Universität zu Berlin. The 2014 Census not only succeeds the "2012 Census of Open Access Repositories in Germany"[1] but enhances it by adding an online survey to the qualitative analysis of the open access repository websites and the automatic validation of its metadata. Like in 2012 the 2014 Census gives insights into the development of open access repositories and current trends in repository design being of substantial use to open access repository operators.</p> <p>This 2014 Census data set represents the data collected in three different ways:</p> <ul> <li>qualitative analysis of the open access repository websites</li> <li>automatic validation of the metadata via OAI-PMH using the DINI-Validator [2] </li> <li>online survey of repository operators</li> </ul> <p>As in 2012 [3] the data set is provided in XLSX as well as in CSV format. The columns represent the criteria and the rows represent the analyzed open access repositories. In the XLSX file the header row gives the definition of each criterion in English and German. In the CSV "content" file the header row is in English short terms. The respective English and German definition can be found in the CSV "readme" file.</p> <p> </p> <p>[1] Vierkant, P. (2013). 2012 Census of Open Access Repositories in Germany: Turning Perceived Knowledge Into Sound Understanding. <em>D-Lib Magazine</em>, 19. http://dx.doi.org/10.1045/november2013-vierkant </p> <p>[2] http://oanet.cms.hu-berlin.de/validator/pages/validation_dini.xhtml</p> <p>[3] Vierkant, Paul; Voigt, Michaela; Dupski, Jens; David, Sammy; Lösch, Mathias (2013): 2012 Census of Open Access Repositories in Germany. fig<strong>share</strong>. <br /> http://dx.doi.org/10.6084/m9.figshare.677099</p>
Data for publication "Benefits of open access to researchers from lower-income countries: A global analysis of reference patterns in 1980–2020"
<p>Data to reproduce figures for the publication "Benefits of open access to researchers from lower-income countries: A global analysis of reference patterns in 1980–2020" (DOI: 10.1177/01655515241245952). Each file contains the data underlying the figure corresponding to the file name.</p>
Monitoring open access publishing of NWO funded research (2015-2021) data set
<p>This is the dataset underlying the report "Monitoring open access publishing of NWO funded research" (<a href="https://doi.org/10.5281/zenodo.7041897">https://doi.org/10.5281/zenodo.7041897</a>)</p> <p>The report presents statistics on the extent to which publications from the period 2015–2021 funded by NWO are available in Open Access. The analyses presented in this report also cover publications funded by the Netherlands Organisation for Health Research and Development ZonMw. This report builds on two earlier reports, published in <a href="https://zenodo.org/record/4446042">2020</a> and <a href="https://zenodo.org/record/5056043">2021</a>, covering publications from the period 2015–2018 and 2015-2020, respectively.</p>
Data and Statistical analysis for: "Predator in the pool? A quantitative evaluation of non-indexed open access journals in aquaculture research"
<p>Data and Statistical analysis for: "Predator in the pool? A quantitative evaluation of non-indexed open access journals in aquaculture research" published in <em>Frontiers in Marine Science</em></p>
Resource Metadata Harvested from Government and Research Open Data Portals
<p>This dataset consists of resource metadata harvested from the APIs of hundreds of government and research data portals from all over the world. This dataset was harvested between the 13<sup>th</sup> and 15<sup>th</sup> of September 2018. The metadata harvested from these portals was translated to a single metadata format (see <em>metadata_format.odt</em>). An overview of all harvested domains is given in <em>portal_list.txt</em>.</p> <p>The harvested data is divided into five gzipped json-lines files, based on the ‘type’ of the resource that is derived from the data of the APIs:</p> <ul> <li><em>dataset_metadata.jsonl.gz</em>: Resources classified as a Dataset, or subsets of dataset (e.g. Dataset:Image and Dataset:Audio) [6 246 250 resources]</li> <li><em>document_metadata.jsonl.gz</em>: Resources classified as a Document, or subset of document (e.g. Document:Paper:Conference and Document:Book) [15 626 541 resources]</li> <li><em>software_metadata.jsonl.gz</em>: Resources classified as Sofware (including Software:Model) [42 036 resources]</li> <li><em>service_metadata.jsonl.gz</em>: Resources classified as a service (e.g. WMS, APIs) [1257 resources]</li> <li><em>other_metadata.jsonl.gz</em>: Resources of which the ‘type’ could not be determined from the data the API returned. This set still contains many datasets [1 502 979 resources]</li> </ul>
Navigating the complex policy landscape for carbon farming in The Netherlands and the EU -- Open Research Europe Extended Data-- Tables 1-6, Figures 1-2
<p>This is extended data for the article entitle 'Navigating the complex policy landscape for carbon farming in The Netherlands and the EU' submitted to Open Research Europe by Eise Spijker. </p>
Research generated data supporting the article manuscript "Setting Grounds for Data Literacy in the Sector of Agriculture: Learning About and with Open Data"
<p>In the research 345 MS courses and 216 MS courses data from the ECTS catalogue (2019) of University of Zagreb Faculty of Agriculture were mapped onto the data literacy competence areas (theme) and DL competence areas sub-themes adapted ODI Data Skills Framework (2020) expanding the term “skill” to “competence” to include knowledge and attitudes. Teaching staff was interviewed in semi-structured interviews on the data literacy competences covered in their courses and open data use and teaching in their courses as well as their perceived importance for the sector of the course.</p> <p>The upload consists of the following .csv files:</p> <table> <tbody> <tr> <td>readme_DL_OD_Salamonetal.csv</td> </tr> <tr> <td>01DL_OD_Salamonetal.csv</td> </tr> <tr> <td>02DL_OD_Salamonetal.csv</td> </tr> <tr> <td>03DL_OD_Salamonetal.csv</td> </tr> <tr> <td>04DL_OD_Salamonetal.csv</td> </tr> <tr> <td>05DL_OD_Salamonetal.csv</td> </tr> <tr> <td>06DL_OD_Salamonetal.csv</td> </tr> <tr> <td>07DL_OD_Salamonetal.csv</td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p>
Data for Research Assessment in the Transition to Open Science. 2019 EUA Open Science and Access Survey Results
<p>This database refers to the data collected by the European University Association (EUA) for its Open Science and Access Survey 2019, which gathered responses from universities and higher education institutions across Europe. The full report published by the association is available at <a href="https://eua.eu/resources/publications/888:research-assessment-in-the-transition-to-open-science.html">https://eua.eu/resources/publications/888:research-assessment-in-the-transition-to-open-science.html</a>.</p> <p>The data included in this database refers only to those universities and higher education institutions that accepted their data to be available in open access (n=174). All information that could lead to the identification of individual universities and higher education institutions was removed from the database (cf. cells highlighted in red). The following files are available:</p> <ul> <li>2019 EUA Open Science and Access Survey</li> <li>Database in the following formats: .xlsx (Microsoft Excel)</li> <li>Survey Codebook: includes information on all the variables and their coding.</li> </ul>
Data from Open Research Data: SNSF monitoring report 2017-2018
<p>This file collection is part of Open Research Data: SNSF monitoring report 2017-2018 (doi 10.5281/zenodo.3618123). This report gives a first overview on the research data management practices adopted by researchers since the introduction of the SNSF Open Research Data Policy in 2017. </p> <p>Please cite this data collection as:<br> Milzow, Katrin; von Arx, Martin; Sommer, Cornélia; Cahenzli, Julia and Perini, Lionel (February 2020). Data from Open Research Data: SNSF monitoring report 2017-2018. Zenodo (10.5281/zenodo.3618209)</p> <p>Further information is given in the corresponding monitoring report<br> Milzow, Katrin; von Arx, Martin; Sommer, Cornélia; Cahenzli, Julia and Perini, Lionel (February 2020). Open Research Data: SNSF monitoring report 2017-2018. Zenodo (10.5281/zenodo.3618123)</p> <p> </p> <p><strong>Contact</strong></p> <p>Swiss National Science Foundation (SNSF)</p> <p>Open Research Data group</p> <p>E-mail: ord@snf.ch</p>
Underlying data - Results from the Open Call: How Citizens can participate in solar energy research?
<p>Underlying data to the "Results from the Open Call: How Citizens can participate in solar energy research?" @</p> <pre>https://zenodo.org/record/3554901#.YAgimxaCE2w</pre> <p>Answers to the online survey in "Call for ideas_answers online_survey.xlsx"</p> <p>Notes from the World Cafe and other meetings from the secretaries: "notes_MMLs_GRECO_2019.pdf</p> <p> </p>
PIR data and EEG scoring for Wellcome Open Research methods paper (Brown et al 2016)
<p>PIR data and EEG-scored sleep in the Wellcome Open Research article:</p> <p>'COMPASS: Continuous Open Mouse Phenotyping of Activity and Sleep Status'</p> <p> </p> <p>1sensorPIRvsEEGdata.csv - PIR based actigraphy for mice to compare to EEG-scored sleep</p> <p>EEG_4mice10sec.csv - Manually scored sleep from EEG files (.edf) from 10.5281/zenodo.160118</p> <p>blandAltLandD.csv - paired estimates of sleep by PIR and EEG methods (sum of 4 mice over 1 day in 30min bins)</p> <p><br> 1monthPIRsleep.csv - 1 month of activity for for figure 4</p> <p><br> 24mice_activity_LD1week.csv - activity and sleep for 24 wt mice (for hierarchical clustering in figure 4)<br> 24mice_sleep_LD1week.csv </p> <p> </p> <p> </p>
A lack of open data standards for large infrastructure projects hampers social-ecological research in the Brazilian Amazon
<p>List of papers used in literature review for "A lack of open data standards for large infrastructure projects hampers social-ecological research in the Brazilian Amazon"</p>
GreenCharge Open Research Data
<p>These datasets are collected from the pilots in the H2020 GreenCharge project. The data format and content is described in the GreenCharge Deliverable D5.6 Open Research Data.</p>
PLOS ONE – a case study of citation analysis of research papers based on the data in an open citation index (The OpenCitations Corpus)
<p>This is a dataset used in and produced by research described in article "PLOS ONE - a case study of citation analysis of research papers based on the data in an open citation index (The OpenCitations Corpus)" that is translation of the original Polish text "PLOS ONE – studium przypadku analizy cytowań prac naukowych na podstawie danych otwartego indeksu cytowań (OpenCitations Corpus)" published by EBiB bulletin (2017, No 176).</p> <p>Data were extracted, as nodes (PLOS_cited_nodes.csv) and edges (PLOS_edges.csv) files from the OpenCitations Corpus (http://opencitations.net/download) on 2017.07.25 and describe all cited papers published by PLOS ONE (nodes), and all citing relations (edges). The research was conducted using Gephi (https://gephi.org/) platform so the same source data are also avaiable as GEXF file (for "one-click" import capabilities). In addition, the same data are published in NET format (but be warned that due to this format limitations, information about the publication year of papers has been lost) used by PAJEK platform, as it is very popular tool for analysis of network data.</p> <p>Published figures have prefix names corresponding to figures captions in the original paper, where they have been thoroughly discussed. This data set contains also the additional figure not published in the article, showing most cited paper with citing chains of articles of lenght not greater than 3.<br> These pictures have much better quality than those published in the article, which allows for "drill down"/zoom-in analysis and large format printing.</p>
washopenresearch: Dataset about open research data information in Water, Sanitation, and Hygiene
The goal of washopenresearch is to provide an overview of open research data related to Water Sanitation and Hygiene (WASH). The package provides access to two datasets `washdev` and `uncnewsletter`. Each dataset collects information on scientific articles about (1) article metadata (e.g. title, first author, correspondence author), (2) supplementary material information, (3) data availability statement, and (4) semantic information (e.g. keywords).
Open Research Data in Medicine - Polish scientists' attitudes towards data sharing
<p>The survey on the attitudes and beliefs of research staff has been carried out at selected Polish medical universities. The purpose of the questionnaire was to collect respondents' opinions on opening research data created during their scientific work. The research was aimed at preparing the necessary educational, technical and legal support for scientists after launching the Polish Medical Platform, when Polish scientists will be asked to deposit their data in local repositories.</p>
Data underlying the research paper "Articulating Social Issues with Open Data: Exploring a Game Jam Approach"
<p>Contains research data underlying the following research paper:</p> <blockquote> <p>Davide Di Staso, Lærke Christiansen, Fernando Kleiman, and Marijn Janssen. 2024. Articulating Social Issues with Open Data: Exploring a Game Jam Approach. In Proceedings of the 8th International Conference on Game Jams, Hackathons and Game Creation Events (ICGJ ’24), October 11, 2024, Copenhagen, Denmark. ACM, New York, NY, USA, 7 pages. https://doi.org/10.1145/3697789.3697798</p> </blockquote> <p>The authors acknowledge the financial support from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie grant agreement No. 955569, "Towards a sustainable Open Data ECOsystem" (ODECO).</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.