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16 results for “Oryctolagus cuniculus”
FIG. 2. — Oocyste d in Description d'une nouvelle espèce d'Eimeria (Coccidia, Eimeridea) chez le lapin de garenne Oryctolagus cuniculus en France
FIG. 2. — Oocyste d' Eimeria roobroucki n. sp. (holotype), n° d'enregistrement: P301LV. Échelle: 10 µm.
Figure 5 in Effect of season and housing systems on various physiobehavioral attributes of local breed of rabbits (Oryctolagus cuniculus) in Southern Punjab, Pakistan
Figure 5. Effect of seasons on TSL of male rabbits under cage system. Data is mean (± SE) and different letters on the bars depict statistical difference at (p ≤ 0.05) for seasons.
Figure 4 in Effect of season and housing systems on various physiobehavioral attributes of local breed of rabbits (Oryctolagus cuniculus) in Southern Punjab, Pakistan
Figure 4. Effect of housing system on various physiological attributes of rabbits. Data is mean (± SE). Similar letters on the bars indicate non-significant (p ≥ 0.05) difference within caged and colony reared rabbits for rectal temperature. Different letters on the bars indicate significant (p ≤ 0.05) difference within caged and colony reared rabbits for respiration rate.
Plate 1 in Reproduction Performance, Serum Biochemical and Growth Indices of Grower Rabbits (Oryctolagus cuniculus) fed Sheabutter (Vitellaria paradoxa C.F. Gaertn.) Nut Meal
Plate 1. Uterus of the dead doe showing four embryos
Figure 2 in Effect of season and housing systems on various physiobehavioral attributes of local breed of rabbits (Oryctolagus cuniculus) in Southern Punjab, Pakistan
Figure 2. Mean values for meteorological attributes during different study seasons.
FIG. 1. — Oocyste d in Description d'une nouvelle espèce d'Eimeria (Coccidia, Eimeridea) chez le lapin de garenne Oryctolagus cuniculus en France
FIG. 1. — Oocyste d'Eimeria roobroucki n. sp. dessinéà la chambre claire. Échelle: 10 µm.
MicroReset: characterization of the rabbit (Oryctolagus cuniculus) fecal metagenome and resistome by deep shotgun sequencing
<p></p><h1>Data source</h1><br>The dataset was generated from 30 rabbit fecal samples subjected to deep shotgun metagenomic sequencing. The sequencing data is available under the BioProject PRJEB50625.<br>Metagenomic Assembly<br>Raw sequencing reads were first pre-processed using fastp for adapter removal and quality trimming. Host-derived reads were filtered out by mapping to the rabbit reference genome (GCF_000001635.27) using Bowtie2 and removing mapped reads with Samtools. Each sample was individually assembled using metaSPAdes. Contigs shorter than 1,500 bp were excluded from downstream analysis.<br><h1>MAG Recovery</h1><br>Reads from each sample were mapped to all 30 assemblies (30×30 mappings) using Bowtie2. The resulting alignments were sorted and indexed with Samtools. Contig coverage across all samples was computed using `jgi_summarize_bam_contig_depths`. Binning was performed with MetaBAT 2 and SemiBin v1.3. MAG quality was assessed with CheckM. Only high-quality MAGs (≥70% completeness, ≤5% contamination, N50 ≥ 8 kb) were retained.<br>Non-Redundant Gene Catalog<br>Gene prediction was carried out using Prodigal on all contigs from the current study (with `-m -p meta`). Genes shorter than 90 bp or lacking start/stop codons were discarded. The remaining genes from both sources were pooled and clustered using CD-HIT-EST (parameters: `-c 0.95 -aS 0.90 -G 0 -d 0 -M 0 -T 0`). The longest contigs were used to select representative genes.<br><h1>MSP Recovery</h1><br>Shotgun reads from the 30 samples were aligned to the non-redundant gene catalog using the Meteor suite, generating a gene abundance matrix (5.7 million genes × 30 samples). Co-abundant genes were grouped into 1,053 Metagenomic Species Pan-genomes (MSPs) using MSPminer.<br><h1>Taxonomic Annotation of MSPs</h1><br>MAGs representing each species were taxonomically annotated using GTDB-Tk with GTDB release r214. The resulting taxonomy was propagated to the corresponding MSPs.<br><h1>Phylogenetic Tree Construction</h1><br>A set of 39 universal phylogenetic marker genes was extracted from the 1,053 MSPs (or their corresponding MAGs, when available) using fetchMGs. Each marker was independently aligned using MUSCLE, and the alignments were concatenated and trimmed using trimAl (parameter: `-automated1`). A maximum-likelihood phylogenetic tree was constructed with FastTreeMP (parameters: `-gamma -pseudo -spr -mlacc 3 -slownni`).<h1>Mapping rate distribution across public cohorts</h1>We generated mapping rate distribution plots using Meteor2 (default parameters) for PRJEB50625 (cohort used in catalogue assembly).<p></p>
F in Behavioural and morphological adaptations for a low-quality resource in semi-arid environments: dung beetles (Coleoptera, Scarabaeoidea) associated with the European rabbit (Oryctolagus cuniculus L.)
F 6–9. Epipharynx of (6) Onthophagus (Palaeonthophagus) latigena d'Orbigny (150×) and (7) O. (Parentius) emarginatus Mulsant (170×), rabbit-pellet consumers, and (8) O. (Palaeonthophagus) fracticornis (Preyssler) (120×) and (9) O. (Onthophagus) taurus (Schreber) (130×), fresh-dung consumers. acr, acroparia; zg, zygum.
F in Behavioural and morphological adaptations for a low-quality resource in semi-arid environments: dung beetles (Coleoptera, Scarabaeoidea) associated with the European rabbit (Oryctolagus cuniculus L.)
F 10–13. Epipharynx of (10) Aphodius (Ammoecius) elevatus (Olivier) (140×) and (11) A. (Anomius) baeticus Mulsant and Rey (160×), rabbit-pellet consumers, and (12) A. (Otophorus) haemorrhoidalis (L.) (400×) and (13) A. (Eudolus) quadriguttatus (Herbst) (350×), fresh-dung consumers. co, corypha; epz, epizygum.
F in Behavioural and morphological adaptations for a low-quality resource in semi-arid environments: dung beetles (Coleoptera, Scarabaeoidea) associated with the European rabbit (Oryctolagus cuniculus L.)
F 2–5. Hypopharynx and mandibles of (2, 3) Thorectes intermedius (Costa) (170×), a rabbit-pellet consumer and (4, 5) Geotrupes stercorarius (L.) (80×), a fresh-dung consumer. m, molar area; pgl, paraglossa; r, retinaculum; sa, scissorial area.
F in Behavioural and morphological adaptations for a low-quality resource in semi-arid environments: dung beetles (Coleoptera, Scarabaeoidea) associated with the European rabbit (Oryctolagus cuniculus L.)
F. 1. Scheme of breeding patterns of the dung beetle community associated with the European rabbit. Drawings after Brussaard (1983), Klemperer and Lumaret (1985) and our results.
On following pages: 18. Omilteme Cottontail (Sylvilagus insonus); 19. Common Tapeti (Sylvilagus brasiliensis); 20 Cottontail (Sylvilagus dice); 23. Mexican Cottontail (Sylvilagus cunicularius); 24. Tres Marias Cottontail (Sylvilagus Robust Cottontail (Sylvilagus robustus); 28. Manzano Mountain Cottontail (Sylvilagus cognatus); 29. Hispid Hare (. Central American Tapeti (Sylvilagus gabbi); 21. Venezuelan Lowland Rabbit (Sylvilagus varynaensis), 22. Dice's graysoni); 25. Eastern Cottontail (Sylvilagus floridanus); 26. Appalachian Cottontail (Sylvilagus obscurus); 27. Caprolagus hispidus); 30. Bunyoro Rabbit (Poelagus marjorita); 31. European Rabbit (Oryctolagus cuniculus). in Leporidae
On following pages: 18. Omilteme Cottontail (Sylvilagus insonus); 19. Common Tapeti (Sylvilagus brasiliensis); 20 Cottontail (Sylvilagus dice); 23. Mexican Cottontail (Sylvilagus cunicularius); 24. Tres Marias Cottontail (Sylvilagus Robust Cottontail (Sylvilagus robustus); 28. Manzano Mountain Cottontail (Sylvilagus cognatus); 29. Hispid Hare (. Central American Tapeti (Sylvilagus gabbi); 21. Venezuelan Lowland Rabbit (Sylvilagus varynaensis), 22. Dice's graysoni); 25. Eastern Cottontail (Sylvilagus floridanus); 26. Appalachian Cottontail (Sylvilagus obscurus); 27. Caprolagus hispidus); 30. Bunyoro Rabbit (Poelagus marjorita); 31. European Rabbit (Oryctolagus cuniculus).
Oryctolagus cuniculus CF_000003625.3_OryCun2.0 extended transcript annotation
<p>Extended transcript annotation GTF files, based on the CF_000003625.3_OryCun2.0_genomic.gtf reference. Transcripts have been identified from an infection time course experiment of rabbit kidney epithelial cell line infected with equine alphaherpesvirus 1. </p> <p>Supplementary material to the publication "Temporal Transcriptional Profiling of Host Cells Infected by a Veterinary Alphaherpesvirus using Nanopore Sequencing" by Tombácz et al, 2024.</p>
Figure 3 in Effect of season and housing systems on various physiobehavioral attributes of local breed of rabbits (Oryctolagus cuniculus) in Southern Punjab, Pakistan
Figure 3. Effect of housing systems on various behavioral attributes of rabbits. Data is mean (± SE). Similar letters on the bars indicate non-significant (p ≥ 0.05) difference within caged and colony reared rabbits for sitting. Different letters on the bars indicate significant (p ≤ 0.05) difference within caged and colony reared rabbits for standing and walking.
Data from: Copy number polymorphism in the α-globin gene cluster of European rabbit (Oryctolagus cuniculus).
Open the record for dataset details and reuse information.
Figure 1 in Effect of season and housing systems on various physiobehavioral attributes of local breed of rabbits (Oryctolagus cuniculus) in Southern Punjab, Pakistan
Figure 1. Map of Pakistan with coordinates and legends indicating Rahim Yar Khan District.
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OpenNeuro
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