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Dataset results
12 results for “Outbreak Investigation”
Antibiotic resistant pathogen outbreak investigation: an interdisciplinary module to teach fundamentals of evolutionary biology
<p>The evolution of resistance to antibiotics provides a timely and relevant topic for teaching undergraduate students evolutionary biology. Here, we present a module incorporating modified sequencing data from eight antibiotic resistant pathogen outbreaks in hospital settings with bioinformatics and phylogenetic analyses. This module uses whole genome sequencing data from hospital outbreaks investigated by the Centers for Disease Control and Prevention to provide examples of antibiotic resistance spread. Students work in groups to analyze outbreak data to identify the bacterial species and antibiotic resistance genes, to infer a phylogenetic tree examining relatedness among isolates, and to determine a possible source of the outbreak. Students then compile their results in individual reports and provide recommendations for preventing the further spread of antibiotic resistant organisms. In addition to providing genomic outbreak data, we include a teaching concepts guide discussing three integral components of the module: how evolutionary biology concepts of natural selection and competition impact antibiotic resistance; outbreak investigation information to aid in phylogenetic analysis and creation of recommendations; and instructions for the bioinformatics protocol. Completion of this module provides students an opportunity to think critically about the evolution of resistance, practice bioinformatics techniques, and relate evolutionary biology to current events.</p>
Data and codes for "The impact, costs, and cost-effectiveness of tuberculosis outbreak investigations in the United States: a model-based analysis"
<p>Data and codes for the manuscript entitled:</p> <p>"<strong>The impact, costs, and cost-effectiveness of tuberculosis outbreak investigations in the United States: a model-based analysis"</strong></p> <p> </p> <p><strong>Please see Readme.txt for details</strong></p>
Transmission and Acquisition of Nontuberculous Mycobacteria Outbreak Investigation (TrANsMIt)
ClinicalTrials.gov study NCT06155747. IPD Sharing: YES. Countries: 1. Publications: 3.
Data and code from: Investigating the Yanomami malaria outbreak: Gold mining and malaria
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Historical investigation of fowl adenovirus outbreaks in South Korea from 2007-2021: A review
<p>Fowl adenoviruses have been long recognized as critical viral pathogens within the poultry industry, associated with severe economic implications worldwide. This specific group of viruses is responsible for a broad spectrum of diseases in birds, and an increasing occurrence in outbreaks was observed in the last ten years. Forty years ago, since their first discovery in South Korea, various serotypes of fowl adenoviruses had been reported to circulate in the fields, and to date, the problem persists. This comprehensive review intends to cover the history and status of fowl adenovirus outbreaks in South Korea and update the current epidemiological landscape based on existing epidemiologic evidence and recently collected data. In addition, transitions in the prevalence of dominant fowl adenovirus serotypes from 2007-2021, alongside the history of intervention strategies, were focused. Finally, future aspects were also discussed.</p>
COVID-19 Genomic Sequencing for Nosocomial Outbreak Investigations
ClinicalTrials.gov study NCT05411562. IPD Sharing: YES. Countries: 1. Publications: 1.
Investigation of an Outbreak Situation of Cutaneous Leishmaniasis Among Military Personnel in French Guiana (CEFELEISH)
ClinicalTrials.gov study NCT04888130. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Supplementary Material for Ph.D. thesis: "Development of a data-intensive centralized system for surveillance and outbreak investigation of bacterial pathogens using whole-genome sequencing""
<p>Supplementary material for Ph.D. thesis.</p>
Supplementary Material. Single laboratory evaluation of the Q20+ nanopore sequencing kit for bacterial outbreak investigations
Open the record for dataset details and reuse information.
The Role of High Resolution-Computed Tomography (CT) in Tuberculosis (TB) Outbreak Investigation
ClinicalTrials.gov study NCT00889759. IPD Sharing: Not stated. Countries: 0. Publications: 1.
Investigation on the Epidemic Prevention Effect of Using Chinese Medicine During the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Outbreak.
ClinicalTrials.gov study NCT05236309. IPD Sharing: Not stated. Countries: 1. Publications: 0.
A Study to Determine if an Investigational Pain Medicine Provides Relief of Chronic Pain After a Shingles Outbreak
ClinicalTrials.gov study NCT00506610. IPD Sharing: Not stated. Countries: 1. Publications: 0.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.