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88 results for “Ovine”
Supplementary dataset to publication: Complete Genome Sequence of Ovine Mycobacterium avium subsp. paratuberculosis Strain JIII-386 (MAP-S/type III) and Its Comparison to MAP-S/type I, MAP-C, and M. avium Complex Genomes.
<p>This is the modified supplemented material to the publication “Complete genome sequence of ovine Mycobacterium avium subsp. paratuberculosis strain JIII-386 (MAP-S/type III) and its comparison to MAP-S/type I, MAP-C, and M. avium complex genomes”.</p> <p>The complete circular genome of Mycobacterium avium subsp. paratuberculosis (MAP) strain JIII-386 from Germany, closed by Nanopore technology in this study, was presented and compared with the draft genome of JIII-386, previously published in [doi:10.1093/gbe/ew154], the closed genome of the MAP-S/type I strain Telford, the MAP-S/type III draft genome of strain S397, twelve closed MAP-C (type II) strains and eight closed Mycobacterium avium (M. a.) strains of subsp. hominissuis (MAH) and subsp. avium (MAA). Structural comparisons clearly revealed the mosaic nature of MAP genomes, the differences between MAP subtypes I, II and III, and the higher diversity of MAP-S compared to MAP-C genomes. </p> <p>The material provides a wealth of detailed results from these analyses and comparisons. These include a list of identified ncRNA and Riboswitches, as well as additional genes in finished JIII-386, the gene content of identified prophage regions, copy number of identified transposable elements and a list of selected virulence-associated genes in the different MAP-type (I - III) strains. The genomic islands identified and included genes along with their predicted functions were presented for six MAP genomes (belonging to MAP-S/type I and III, and MAP-C), one MAH genome and one MAA genome. One table shows the corresponding genomic islands in the genomes of JIII-386, Telford and three MAP-C genomes. Furthermore, homologous genes of known MAP-S specific Large Sequence Polymorphisms regions (LSP<sup>S</sup> = LSP-S) were recorded in different MAP-S type strains, one MAH and one MAA strain, as well as genes of deletions #1 (LSP<sup>A</sup>-20), #2, and s-delta-1, previously described as MAP-S-specific deletions, their presence or absence in 3 MAP-S, 12 MAP-C, 4 MAH, and 4 MAA strains were listed. Different presence or absence of genes, but also identified frameshifts or disruptions of various virulence-associated genes could lead to the different MAP-type specific phenotypic characteristics. Comprehensive core and pan genome analyses (results listed in six tables) revealed unique genes and genes likely to have been acquired by horizontal gene transfer in different MAP types and subtypes, but also emphasized the highly conserved and close relationship, and the complex evolution of M. a. strains.</p> <p> </p>
EDEN2020 Ovine Diffusion Tensor Magnetic Resonance Tractography Atlas
<p>This dataset has been created to share the first <em>in vivo, </em>population-averaged Diffusion Tensor Magnetic Resonance Imaging (DTI) Ovine Tractography Atlas (OTA), where the course of the main white matter fiber bundles of the ovine brain has been reconstructed. The OTA has been described in the related paper ‘In vivo Diffusion Tensor Magnetic Resonance Tractography of the Sheep Brain: An Atlas of the Ovine White Matter Fiber Bundles’ by Pieri <em>et al. </em>(2019) <a href="https://doi.org/10.3389/fvets.2019.00345">https://doi.org/10.3389/fvets.2019.00345</a></p> <p>In the context of the EU’s Horizon EDEN2020 project, in vivo brain MRI protocol for ovine animal models was optimized on a 1.5T scanner. High resolution conventional MRI scans and DTI sequences (b-value = 1,000 s/mm<sup>2</sup>, 15 directions) were acquired on ten anesthetized sheep <em>ovis aries</em>, to define the diffusion features of normal adult ovine brain tissue. Topography of the ovine cortex was studied, and DTI maps were derived, to perform DTI deterministic tractography reconstruction of the corticospinal tract (CST), corpus callosum (CC), fornix (FX), visual pathway (VP), and occipitofrontal fascicle (OF), bilaterally for all the animals. Binary masks of the tracts were then coregistered and reported in the space of a standard stereotaxic ovine reference system ('ovine_model_05.nii', Nitzsche B. <em>et al.</em>, <em>Front. Neuroanat.</em> 9:69. <a href="https://doi.org/10.3389/fnana.2015.00069">https://doi.org/10.3389/fnana.2015.00069</a>). Finally, these were combined across animals to obtain population probability masks for each tract, representing voxel- by-voxel probability of the presence of the tract in the 10 animals, thus ranged between 0 and 10. </p> <p>Please don't forget to cite this publication when using the Ovine Tractography Atlas: </p> <p>Pieri V., Trovatelli M., Cadioli M., Zani D.D., Brizzola S., Ravasio G., Acocella F., Di Giancamillo M., Malfassi L., Dolera M., Riva M., Bello L., Falini A., & Castellano A. (2019). In vivo Diffusion Tensor Magnetic Resonance Tractography of the Sheep Brain: An Atlas of the Ovine White Matter Fiber Bundles. <em>Front Vet Sci, 6</em>(345), 345 <a href="https://doi.org/10.3389/fvets.2019.00345">https://doi.org/10.3389/fvets.2019.00345</a> </p> <p>This work has been carried out in the context of the EDEN2020 (Enhanced Delivery Ecosystem for Neurosurgery in 2020, www.eden2020.eu) project, that received funding from the European Union’s EU Research and Innovation programme Horizon 2020 under Grant Agreement No. 688279.</p>
MALDI-TOF spectra of bovine, caprine and ovine milk and their mixtures
<p>In this dataset we provide MALDI-TOF spectra of bovine milk in caprine and ovine milk. The dataset contains normalized spectra of pure milk samples and their mixtures. <strong>Different level of adulteration (0.5%, 1%, 5%, 10%, 20%, 40%, 60%, 80%)</strong> were analyzed throughout the lactation period of goat and sheep. Two different ranges of peptide-protein spectra <strong>(500–4000 Da; 4–20 kDa)</strong> were used. Exported spectra are in TXT files (<em>m/z</em> and intensity) for processing in other software (ex. mMass). Acquisition methods are included.</p> <p>MALDI-TOF MS analysis was performed using an Autoflex Speed (Bruker Daltonics, Germany) equipped with a SmartBeam<sup>TM</sup> II laser (355 nm) and flexControl software (version 3.4 Build 135, Bruker Daltonics, Germany).</p> <p> </p> <p>The dataset is a part of Supplementary file for the manuscript:</p> <p><em><strong>Evaluation of MALDI‐TOF MS technology in small ruminants’ milk adulteration using raw bovine milk</strong></em> by L. Rysova, P. Cejnar, O. Hanus, V. Legarova, J. Havlik, H. Nejeschlebova, I. Nemeckova, R. Jedelska, M. Bozik, submitted to <em>Journal of Dairy Science</em> (Manuscript ID JDS.2021-21396) on 08-Oct-2021.</p>
Dielectric Measurements of Ovine Heart
<p>This file includes datasets from ex vivo dielectric properties measurements performed on four ovine hearts at National University of Ireland Galway in July 2019. </p> <p>The preliminary results of this experiment were to be presented at EuCAP 2020 under the title "Detailed Dielectric Characterisation of the Heart and Great Vessels."</p>
FIG. 3 in Être un ovin malade en Bas-Berry (fin XVIII - milieu XX siècle)
FIG. 3. — Bergère avec son chien et ses moutons (Archives départementales de l'Indre, cote 48 JB 495).
Micro-CT Imaging Dataset on ex-vivo Ovine Functional Spinal Segments as Healthy, Injured and Treated with Cement Discoplasty
<p>General information:</p> <p>- This dataset contains micro-CT images and mechanical test data from ovine functional spinal units (FSU). <br> - The micro-CT data was produced using a Bruker SkyScan 1172. The settings for the scans are given in the '.log' files in each folder. <br> - The compression testing was conducted on an MTS 858 Mini Bionix T/II. The settings for each test can be found in test '.txt' files.<br> - In short, every FSU was mechanically tested in compression under different conditions. Before and after every test, the FSUs were scanned to ensure there was no damage<br> to the sample. More information can be found in the related publication: <br> - The mechanical testing data is arranged in folders with consecutive cycles. It is highly recommended to use the last three cycles for analysis. </p> <p>Data set notation:</p> <p>- All the datasets are noted by Sheep number. Sh7 = Sheep 7; Sh8 = Sheep 8; Sh9 = Sheep 9. In the publication, the numbers were switched to 1,2,3 respectively.<br> - files denoted with '_rec' contain the reconstruction of the projection images. <br> - 'Tested' or 'After test' files refers to the scan after mechanical testing. </p>
FIG. 2 in Présence, perception et prévention de la fasciolose ovine aux et siècles
FIG. 2. — Signes cliniques et nécropsiques de la fasciolose ovine: A, guide FAMACHA © pour le diagnostic de l'anémie ovine par examen des muqueuses oculaires; B, ictère chez une brebis: aspect jaune du blanc de l'oeil; C, « Bouteille » ou oedème sous-mandibulaire chez un ovin atteint de douve; D, crise de mortalité par fasciolose chronique: décès de cinq ovins en deux jours; E, section de foie avec douves adultes et hypertrophie des vaisseaux biliaires. Crédits: FAMACHA (A); National Animal Disease Information Service (www.nadis.org.uk, dernière consultation le 9 avril 2024) (B-D); Wikipedia, image libre de droits (E).
FIG. 1 in Présence, perception et prévention de la fasciolose ovine aux et siècles
FIG. 1. — Cycle parasitaire de la douve du foie Fasciola hepatica Linnaeus, 1758. Crédit: A. Binois-Roman.
FIG. 4 in Présence, perception et prévention de la fasciolose ovine aux et siècles
FIG. 4. — Distribution étiologique de 42 mentions indépendantes de maladies ovines relevées dans des documents comptables médiévaux.
FIG. 5 in Présence, perception et prévention de la fasciolose ovine aux et siècles
FIG. 5. — Calendrier basé sur le calendrier médiéval de l'élevage ovin et sur la présentation clinique de la fasciolose aux XVIIIe-XIXe siècles (Binois-Roman 2017). Les caractères gras reprennent les indications de saisonnalité des traités agricoles médiévaux. Abréviations: InsW, Insertion à Walter; JdB, Jean de Brie; Sen, Séneschaucie; WoH, Walter of Henley. Crédit: A. Binois-Roman.
FIG. 1. — L in Être un ovin malade en Bas-Berry (fin XVIII - milieu XX siècle)
FIG. 1. — L'épizootie de fièvre aphteuse dans l'Indre, 1919-1921.
FIG. 4 in Être un ovin malade en Bas-Berry (fin XVIII - milieu XX siècle)
FIG. 4. — Ovin passant dans un bain d'eau de chaux (Bénion 1874: 483).
FIG. 2 in Être un ovin malade en Bas-Berry (fin XVIII - milieu XX siècle)
FIG. 2. — Évolution du nombre d'ovins dans l'Indre de 1852 à 2011.
FIG. 5 in Être un ovin malade en Bas-Berry (fin XVIII - milieu XX siècle)
FIG. 5. — Ovin saigné à la veine de la joue (Daubenton 1810: 413).
FIG. 3 in Présence, perception et prévention de la fasciolose ovine aux et siècles
FIG. 3. — Squelettes ovins de la fosse 310, Téteghem – Carlines 3. Crédit photo: A. Binois-Roman.
Microbiological monitoring results for bovine and ovine carcass production in Australia.
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Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus.
Pharmacodynamic Equivalence of Ovine Enoxaparin to Lovenox®
ClinicalTrials.gov study NCT04402762. IPD Sharing: NO. Countries: 1. Publications: 2.
Ovine Graft (Omniflow II) Versus PTFE in Below Knee Arterial Reconstruction
ClinicalTrials.gov study NCT00845585. IPD Sharing: Not stated. Countries: 1. Publications: 9.
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus
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