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99 results for “PC3”
Filtered and annotated SNV and indel variants in the PC3 and LNCaP human prostate cancer cell lines
<p>150bp paired-end reads (insert size 350bp) were obtained using the Illumina HiSeqX sequencer. Samtools v1.3.1 mpileup and bcftools were used to interrogate indexed BAM files, from whole-genome reads aligned to human reference genome GRCh38 build 82, and generate a VCF (Variant Call Format) file of single nucleotide variants (SNVs) and short indel variants. Variants private, or unique to a particular cell line, or shared by both were next identified. Variants (likely to be common germline variants) present in HapMap, 1000 genomes phase 3 (2,504 human genomes), and the National Heart Lung and Blood Institute’s Exome Sequencing Project (ESP) (bundled variant data file available at https://goo.gl/mEogvD) were excluded. Variant files (VCF) were filtered using SnpSift with the following parameters: 'QUAL \textgreater= 200 \&\& DP \textgreater= 30', where QUAL denotes minimum variance confidence and DP total depth threshold. Filtered variants were annotated using SnpEff v4.3g. Please see https://github.com/sciseim/PCaWGS for associated scripts.</p> <p> </p>
de novo genome assembly of the PC3 human prostate cancer cell line
<p>Whole-genome sequencing reads from the PC3 human prostate cancer cell line were used to generate a <em>de novo </em>assembly with SGA v0.10.15. Please see https://github.com/sciseim/PCaWGS for associated scripts. Library preparation was performed using a TruSeq Nano DNA kit (Illumina) with a target insert size of 350bp. Paired-end libraries (150bp) were sequenced using a HiSeqX sequencer (Illumina).</p> <p> </p> <p> </p> <p> </p>
Automated bio-AFM generation of large mechanome data set and their analysis by machine learning to classify prostatic cell lines_Training base 100 PC3-GFP
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Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines Panc-1, FaDu and PC3
GEO Series GSE85614. Homo sapiens. 8 samples. Type: Expression profiling by array.
Siomycin A treatment in prostate cancer cell lines PC3 and LNCaP
GEO Series GSE36531. Homo sapiens. 24 samples. Type: Expression profiling by array.
The effects of HNF1b over-expression in PC3 cells
GEO Series GSE63134. Homo sapiens. 14 samples. Type: Expression profiling by array.
MeDIP-Chip of PrEC, LnCAP, and PC3 cells treated with vehicle control, sulforaphane, or 3,3’-diindolylmethane
GEO Series GSE47017. Homo sapiens. 27 samples. Type: Methylation profiling by genome tiling array.
Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line
GEO Series GSE12334. Homo sapiens. 17 samples. Type: Methylation profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array.
The transcriptomes of PC3 cells with or without KLF16 interference
GEO Series GSE138286. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide occupancy of FLAG-MED25 and ETV4 in PC3 cells
GEO Series GSE133445. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Inhibition of proliferation and induction of autophagy by atorvastatin in PC3 prostate cancer cells correlate with downregulation of Bcl2 and upregulation of miR-182 and p21 [Gene expression]
GEO Series GSE46374. Homo sapiens. 4 samples. Type: Expression profiling by array.
RNA-seq profiles after SP-2509 Treatment of LNCaP, C42B, and PC3 cells
GEO Series GSE59009. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
AR dimerization surface mutants and wt in PC3 cells
GEO Series GSE210393. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
RNA-Seq profiles of human prostate cancer PC3 cells with TTC3 knockdown.
GEO Series GSE291122. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Inhibition of proliferation and induction of autophagy by atorvastatin in PC3 prostate cancer cells correlate with downregulation of Bcl2 and upregulation of miR-182 and p21 [miRNA expression]
GEO Series GSE46375. Homo sapiens. 4 samples. Type: Non-coding RNA profiling by array.
Gene expression profiling from human prostate cancer PC3 or DU145 cells with control or ESS2 knockdown.
GEO Series GSE173998. Homo sapiens. 4 samples. Type: Expression profiling by array.
The effect of TRPM2-AS depletion in human prostate carcinoma PC3 cell line
GEO Series GSE40687. Homo sapiens. 8 samples. Type: Expression profiling by array.
ALKBH3 Knockdown in PC3 prostate cancer cells
GEO Series GSE57568. Homo sapiens. 4 samples. Type: Expression profiling by array.
Gene expression profile in bone metastatic prostate cancer cell line, PC3, following growth in bone marrow conditioned medium (BMCM)
GEO Series GSE38714. Homo sapiens. 6 samples. Type: Expression profiling by array.
The gene expression profile of renal cell carcinoma cell line (786-O) versus prostate cancer cell line (PC3) in co-culture with primary murine muscle progenitor cells
GEO Series GSE61942. Homo sapiens. 12 samples. Type: Expression profiling by array.
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.