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ShareScore release 0.9.0
Dataset results
3 results for “Parallel Workflow”
In-memory integration of existing software components for parallel adaptive unstructured mesh workflows: PHASTA 3D dam break
<p>Input mesh, solution field, configuration files, and job scripts for running the adaptive PHASTA-Chef 3D dam break case.</p> <p>Data stream, POSIX file, and ramdisk results are also included. The python scripts used to generate the bandwidth and open/close time plots are included.</p>
An automated workflow for parallel processing of large multiview SPIM recordings
<p>Selective Plane Illumination Microscopy (SPIM) allows to image developing organisms in 3D at unprecedented temporal resolution over long periods of time. The resulting massive amounts of raw image data requires extensive processing interactively via dedicated graphical user interface (GUI) applications. The consecutive processing steps can be easily automated and the individual time points can be processed independently, which lends itself to trivial parallelization on a high performance computing (HPC) cluster. Here, we introduce an automated workflow for processing large multiview, multichannel, multiillumination time-lapse SPIM data on a single workstation or in parallel on a HPC cluster. The pipeline relies on <em>snakemake</em> to resolve dependencies among consecutive processing steps and can be easily adapted to any cluster environment for processing SPIM data in a fraction of the time required to collect it.</p>
Data for "A massively parallel double selection workflow for the evolution of molecular switches based on surface-display in Escherichia coli" by Givelet, et al., 2023
<p>Data related to a publication on "A massively parallel double selection workflow for the evolution of molecular switches based on surface-display in Escherichia coli"</p> <p> </p> <p>The data contains</p> <p>- FACS data for the images (organized in folders)<br> - images (tiff and jpg)<br> - sequence data (fasta)<br> - one video (mov)</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.