Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
3
datasets available to search
ShareScore release 0.9.0
Dataset results
3 results for “Phallusia”
Mastodon example data set - 10 tracked phallusia mammillata embryos
<ul> <li>This dataset originates from the Phallusia mammillata embryonic development dataset, which was published on figshare. <ul> <li><a href="https://figshare.com/projects/Phallusiamammillata_embryonic_development/64301" rel="nofollow">https://figshare.com/projects/Phallusiamammillata_embryonic_development/64301</a>.</li> </ul> </li> <li>The dataset is described in the following publication: <ul> <li>Léo Guignard et al., Contact area–dependent cell communication and the morphological invariance of ascidian embryogenesis. Science369, eaar5663(2020). DOI:<a href="https://doi.org/10.1126/science.aar5663" rel="nofollow">10.1126/science.aar5663</a></li> </ul> </li> <li>The dataset has been converted to Mastodon file format using these scripts: <ul> <li>Astec file format to CSV: <a href="https://github.com/GuignardLab/LineageTree/blob/master/src/LineageTree/legacy/export_csv.py">https://github.com/GuignardLab/LineageTree/blob/master/src/LineageTree/legacy/export_csv.py</a></li> <li>CSV to Mastodon file format: <a href="https://github.com/mastodon-sc/mastodon-deep-lineage/blob/master/src/test/java/org/mastodon/mamut/astec/AstecReader.java">https://github.com/mastodon-sc/mastodon-deep-lineage/blob/master/src/test/java/org/mastodon/mamut/astec/AstecReader.java</a></li> </ul> </li> <li>Limitations resulting from the conversion: <ul> <li>Image data is not included in the projects. This would require additional effort. However, it is probably not necessary for the intended use cases (tests of lineage clustering, lineage registration, and Blender visualization).</li> <li>Only datasets Pm01 – Pm10 have been converted.</li> <li>The cell names were missing for Pm11-Pm13. To handle this, the conversion scripts would need to be adapted. Thus, these datasets are not included.</li> <li>The uploaded data for Pm14 is faulty on figshare. Thus it is not included.</li> <li>Half-Pm1, U0126PM1 and U0126PM2 do not contain lineages or coordinates. Thus, these datasets are not included.</li> <li>When opening the Mastodon projects, a message appears stating that the image data is missing. It can be chosen, to open the project without image data ("dummy image data"). This must be confirmed. After that, it should work.</li> </ul> </li> </ul>
FIGURE 18. Phallusia nigra Savigny, 1816. A in The family Ascidiidae Herdman (Tunicata: Ascidiacea) in Bocas del Toro, Panama. Description of six new species
FIGURE 18. Phallusia nigra Savigny, 1816. A. Animal in the field. B. Right side of body (without tunic). C. Left side of body (without tunic). Scale bar: B, C = 1.0 cm.
FIGURE 11. Phallusia caguayensis. A in Ascidians collected during the Madibenthos expedition in Martinique: 1 - Phlebobranchia
FIGURE 11. Phallusia caguayensis. A, whole body, left side; B, body stained and opened on the ventral line; C, detail of the neural area; D, branchial tissue. Scale bars = 1cm.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.