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7 results for “Phenylpropanoid pathway”
Alignments used in "The evolution of the phenylpropanoid pathway entailed pronounced radiations and divergences of enzyme families"
<p>Alignments used in de Vries et al. (2021) "The evolution of the phenylpropanoid pathway entailed pronounced radiations and divergences of enzyme families" published as</p> <p>(1) a pre-print: https://doi.org/10.1101/2021.05.27.445924</p> <p>(2) in Plant Journal (in press)</p>
A High-quality Genome Assembly of Pseudocydonia sinensis Uncovers Uique Phenylpropanoid Pathways
<p>Filename Description Format<br>Pseudocydonia_sinensis.cds.fasta Coding sequence file, with each entry representing the nucleotide sequence of a gene. FASTA<br>Pseudocydonia_sinensis.prot.fasta Protein sequence file, with each entry corresponding to the amino acid sequence of a transcript. FASTA<br>Pseudocydonia_sinensis.annotation.gff3 Genome feature annotation file, describing the locations of genes, exons, and other genomic features. GFF3<br>Pseudocydonia_sinensis.genome.fasta Genome sequence file, providing the complete nucleotide sequence of the genome. FASTA<br>ARK.pep.fa Protein sequence file containing the deduced ancestral protein sequences for the Rosaceae karyotype. FASTA<br>ARK.gff Simplified GFF file formatted specifically for WGDI toolkit. Contains seven columns: chromosome, gene ID, start, end, strand, order, and gene ID. This file represents the positional and structural information of reconstructed ancestral genes in the Ancestral Rosaceae Karyotype. GFF3(7-columns)</p>
Defense mechanisms against herbivory: expression regulation of spruce gene family members representative of the phenylpropanoid pathway
GEO Series GSE22116. Picea; Picea engelmannii x Picea glauca. 94 samples. Type: Expression profiling by array.
Gene expression profile of phenylpropanoid pathway in black and red rice pericarps.
GEO Series GSE67987. Oryza sativa. 16 samples. Type: Expression profiling by array.
Direct regulation of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine
GEO Series GSE195646. Vitis vinifera. 12 samples. Type: Expression profiling by array.
Direct regulation of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine
GEO Series GSE180450. Vitis vinifera. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The phenylpropanoid pathway is controlled at different branches by a set of R2R3 MYB C2 repressors in grapevine
GEO Series GSE58742. Vitis vinifera. 6 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.