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27 results for “Phoronis”
Phoronis ovalis decontaminated FSCR
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Phoronis pallida decontaminated FSCR
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Phoronis pallida decontaminated gx
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Phoronis ovalis decontaminated gx
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Supplementary material 1 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Character matrix of 32 morphological and reproductive characters among 11 phoronid species considered in the Discussion.:
Phoronis ovalis SPAdes preassembly
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Phoronis pallida SPAdes preassembly
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Figure 4 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 4 - Phoronis ijimai Oka, 1897, NSMT-Te 885, transverse section through basal part of lophophore.
Figure 2 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 2 - Phoronis ijimai Oka, 1897, NSMT-Te 879. A Living individuals collected from the pier of Misaki Marine Biological Station B enlargement of living individuals C preserved individual (10% formalin seawater) with a transparent cylindrical tube.
Supplementary Figure S3 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Supplementary Figure S3 - Parsimonious reconstruction of four adult morphological characters among 11 phoronid species on the cladogram of the cluster analyses based on 32 morphological characters.
Supplementary Figure S1 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Supplementary Figure S1 - A Cladogram of single-linkage cluster analysis among 11 phoronid species based on 23 morphological characters excluding nephridial characters B majority-rule consensus tree of 100 equally parsimonious tree obtained by cladistics analysis among 11 phoronid species based on 23 morphological characters excluding nephridial characters. Numerals on nodes indicate frequency values.
Figure 7 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 7 - Phoronis ijimai. A NSMT-Te 878, eggs brooded in the lophophore (some tentacles have been removed) B NSMT-Te 884, transverse section through the basal part of the lophophore, showing mature eggs on the basal nidamental glands C NSMT-Te 883, enlargement of brooded eggs, showing various developmental stages. Abbreviations: eg egg; te tentacle.
Figure 8 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 8 - Phoronis emigi sp. n., NSMT-Te 714 (holotype), photographed in the preserved state (10% formalin seawater) before sectioning.
Figure 15 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 15 - Parsimonious reconstruction of four adult morphological characters among nine phoronid species on the maximum-likelihood tree based on concatenated COI–18S–28S dataset.
Figure 3 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 3 - Phoronis ijimai Oka, 1897, NSMT-Te 880. A Living bivalve (Barbatia sp.) with various sessile organisms B Living Phoronis ijimai on the shell (arrowheads).
Figure 14 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 14 - A Maximum-likelihood tree for 13 phoronid samples based on the combined 18S + 28S data set; three brachiopod species (Novocrania anomala, Discinisca cf. tenuis, and Glottidia pyramidata) are included as outgroup taxa B maximum-likelihood tree for 11 phoronid samples based on the combined COI + 18S + 28S data set; the tree is rooted with Phoronis ovalis. Scale bars indicate branch length in substitutions per site. Nodal support values are presented as the ML bootstrap value followed by the Bayesian posterior probability; only values >50% and 0.50, respectively, are shown.
Figure 13 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 13 - A Maximum-likelihood tree for 15 phoronid samples based on 18S data; three brachiopod species (Novocrania anomala, Discinisca cf. tenuis, and Glottidia pyramidata) are included as outgroup taxa B maximum-likelihood tree for 12 phoronid samples based on COI data; the tree is rooted with Phoronis ovalis. The scale bars indicate branch length in substitutions per site. Nodal support values are presented as the ML bootstrap value followed by the Bayesian posterior probability; only values >50% and 0.50, respectively, are shown.
Figure 11 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 11 - Phoronis emigi sp. n., NSMT-719 (paratype). A Transverse section through the posterior part of the body, showing four mesenteries and the position of the giant nerve fiber B enlargement of longitudinal muscles of the long feathery type. Abbreviations: am anal mesentery; lnf left giant nerve fiber; i intestine; llm left lateral mesentery; om oral mesentery; rlm right lateral mesentery; s stomach.
Figure 10 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 10 - Reconstructed three-dimensional images and transverse sections of the nephridium of Phoronis emigi sp. n., based on NSMT-Te 721 (paratype). A Lateral view, showing the different lengths of the ascending and descending branches B dorsal view, showing the offset arrangement of the nephridia, with the nephridiopores at different levels along the body axis C transverse section through the ascending branch D transverse section through the tip of the descending branch, showing the nephridial funnels. Abbreviations: ab ascending branch; an anus; db descending branch; es esophagus; in intestine; lne left nephridium; nf nephridial funnel; p nephridiopore; rne right nephridium; ti funnel tissue. Planes C and D in panel A indicate the positions of the transverse sections in C and D.
Supplementary Figure S2 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Supplementary Figure S2 - Maximum-likelihood tree for 13 phoronid samples based on 28S data; three brachiopod species (Novocrania anomala, Discinisca cf. tenuis, and Glottidia pyramidata) are included as outgroup taxa. The scale bar indicates branch length in substitutions per site. Nodal support values are presented as the ML bootstrap value followed by the Bayesian posterior probability; only values >50% and 0.50, respectively, are shown.
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