Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
47
datasets available to search
ShareScore release 0.9.0
Dataset results
47 results for “Phoxinus phoxinus”
Figure 1 in First record of Phoxinus csikii Hankó, 1922 (Actinopterygii, Cypriniformes) in France
Figure 1. – Distribution of Phoxinus csikii Hankó, 1922 (red squares) in Europe with its first occurrence in France at Essey-et-Maizerais (top left box); modified and adapted from Palandačić et al. (2017a).
Fig. 2. A in Novel data support validity of Phoxinus chrysoprasius (Pallas, 1814) (Actinopterygii, Leuciscidae)
Fig. 2. A haplotype network based on cytochrome oxidase I (CO1) fragment using 112 previously published GenBank sequences and representing 20 genetic clades numbered as in Palandačić et al. (2017, 2020), of which 12 are considered valid species including P. chrysoprasius (Pallas, 1814) and Kuban' Phoxinus (an available species name not known). The lines carry the number of mutational steps (shown in red).
Fig. 1 in Novel data support validity of Phoxinus chrysoprasius (Pallas, 1814) (Actinopterygii, Leuciscidae)
Fig. 1. Map of the localities of Phoxinus Agassiz, 1835 in river drainages of the northern and north-eastern coasts of the Black Sea and the Caspian Sea based on numerous published sources (references available in Supp. file 1) and public museum collections (Museum of Zoology, National Museum of Natural History, Kyiv, Ukraine; Natural History Museum, Vienna, Austria; Zoological Research Museum Alexander Koenig, Bonn, Germany). Coloured circles and numbers correspond to genetically examined individuals of clades specified in Palandačić et al. (2017, 2020): yellow circle = P. marsilii, Clade 9; black circles = 'Baltic Phoxinus', Clade 17; grey circles = P. colchicus, Clade 18; purple circle = 'Kuban Phoxinus', Clade 19; pink circle = 'Crimean Phoxinus', Clade 20.
Fig. 4 in Novel data support validity of Phoxinus chrysoprasius (Pallas, 1814) (Actinopterygii, Leuciscidae)
Fig. 4. DFA based on 11 counts, two coded characters, and 55 relative measurements, for males and females separately (A) and for females only (B). Numbers of samples or clades as in Fig. 3. Abbreviations: f = females; m = males. DFA statistics values: A. Wilks' Lambda 0.00000, approx. F (156.189) = 11.390, p <0.0000. B. Wilks' Lambda 0.00002, approx. F (48.48) = 36.279, p <0.0000 (perfect discrimination).
Fig. 3 in Novel data support validity of Phoxinus chrysoprasius (Pallas, 1814) (Actinopterygii, Leuciscidae)
Fig. 3. DFA based on 11 counts and 2 coded characters as in Supp. file 4. Clade 5 = 5a, Danubian tributaries in Bulgaria (Nishava, Beli Vit, and Palakaria samples and P. csikii Hankó, 1922 from type locality). Clade 14 = non-Danubian rivers of the Black Sea coast in Bulgaria (14a, Izvorska, Veleka, Karaagach and Kamchiya) and Turkey (14b, Gönen and Sapanca). Clade 9 = P. marsilii Heckel, 1836. Clade 20 = Crimea, Salhir. DFA statistics values: Wilks' Lambda 0.16694, approx. F (45.1345) = 14.709, p <0.0000 (perfect discrimination).
Fig. 5. A in Novel data support validity of Phoxinus chrysoprasius (Pallas, 1814) (Actinopterygii, Leuciscidae)
Fig. 5. A. Neotype of Phoxinus chrysoprasius (Pallas, 1814), ♂ (ZFMK 93640-59). B. ♀ (ZFMK 93640- 59), 87.2 mm SL, same locality and date as the neotype.
Cortese et al. 2024. The effect of metabolism on cognitive performance varies with task complexity in common minnows Phoxinus phoxinus
<p>These datasets have been used to produce the figures and results of the manuscript entitled "The effect of metabolism on cognitive performance varies with task complexity in common minnows <em>Phoxinus phoxinus</em>" by Cortese D, Munson A, Storm Z, Jones NAR and Killen SS (2024).</p>
North Temperate Lakes site, station Allequash Lake, study of animal abundance of Phoxinus neogaeus in units of numberPerEffort on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from North Temperate Lakes (NTL) contains animal abundance of Phoxinus neogaeus measurements in numberPerEffort units and were aggregated to a yearly timescale.
North Temperate Lakes site, station Crystal Lake, study of animal abundance of Phoxinus eos in units of numberPerEffort on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from North Temperate Lakes (NTL) contains animal abundance of Phoxinus eos measurements in numberPerEffort units and were aggregated to a yearly timescale.
North Temperate Lakes site, station Trout Lake, study of animal abundance of Phoxinus neogaeus in units of numberPerEffort on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from North Temperate Lakes (NTL) contains animal abundance of Phoxinus neogaeus measurements in numberPerEffort units and were aggregated to a yearly timescale.
Data from: The role of geography and ecology in shaping repeated patterns of morphological and genetic differentiation between European minnows (Phoxinus phoxinus) from the Pyrenees and the Alps
Neutral and selective processes can drive repeated patterns of evolution in different groups of populations experiencing similar ecological gradients. In this paper, we used a combination of nuclear and mitochondrial DNA markers, as well as geometric morphometrics, to investigate repeated patterns of morphological and genetic divergence of European minnows in two mountain ranges: the Pyrenees and the Alps. European minnows (Phoxinus phoxinus) are cyprinid fish inhabiting most freshwater bodies in Europe, including those in different mountain ranges that could act as major geographical barriers to gene flow. We explored patterns of P. phoxinus phenotypic and genetic diversification along a gradient of altitude common to the two mountain ranges, and tested for isolation by distance (IBD), isolation by environment (IBE) and isolation by adaptation (IBA). The results indicated that populations from the Pyrenees and the Alps belong to two well differentiated, reciprocally monophyletic mtDNA lineages. Substantial genetic differentiation due to geographical isolation within and between populations from the Pyrenees and the Alps was also found using rapidly evolving AFLPs markers (isolation by distance or IBD), as well as morphological differences between mountain ranges. Also, morphology varied strongly with elevation and so did genetic differentiation to a lower extent. Despite moderate evidence for IBE and IBA, and therefore of repeated evolution, substantial population heterogeneity was found at the genetic level, suggesting that selection and population specific genetic drift act in concert to affect genetic divergence.
Supplementary material 3 from: Artaev ON, Turbanov IS, Bolotovskiy AA, Gandlin AA, Levin BA (2024) Taxonomic revision of Phoxinus minnows (Leuciscidae) from Caucasus, with description of a new narrow-ranged endemic species. Zoosystematics and Evolution 100(1): 291-308. https://doi.org/10.3897/zse.100.115696
Meristic and qualitative characters of Phoxinus adagumicus sp. nov., P. chrysoprasius, P. colchicus and other Phoxinus species published in the literature
Supplementary material 2 from: Artaev ON, Turbanov IS, Bolotovskiy AA, Gandlin AA, Levin BA (2024) Taxonomic revision of Phoxinus minnows (Leuciscidae) from Caucasus, with description of a new narrow-ranged endemic species. Zoosystematics and Evolution 100(1): 291-308. https://doi.org/10.3897/zse.100.115696
Primary morphological data of Phoxinus adagumicus sp. nov. from type locality (Pryamaya Shchel River)
Supplementary material 1 from: Artaev ON, Turbanov IS, Bolotovskiy AA, Gandlin AA, Levin BA (2024) Taxonomic revision of Phoxinus minnows (Leuciscidae) from Caucasus, with description of a new narrow-ranged endemic species. Zoosystematics and Evolution 100(1): 291-308. https://doi.org/10.3897/zse.100.115696
Additional material on Phoxinus adagumicus sp. nov. and comparative material on Phoxinus chrysoprasius and P. colchicus
Supplementary material 7 from: Artaev ON, Turbanov IS, Bolotovskiy AA, Gandlin AA, Levin BA (2024) Taxonomic revision of Phoxinus minnows (Leuciscidae) from Caucasus, with description of a new narrow-ranged endemic species. Zoosystematics and Evolution 100(1): 291-308. https://doi.org/10.3897/zse.100.115696
ML phylogenetic tree of concatenated COI and cytb mtDNA sequences representing all available species in Genabnk combined with our data set
Figure 8. – Phoxinus dragarum Holotype m in Revision of Phoxinus in France with the description of two new species (Teleostei, Leuciscidae)
Figure 8. – Phoxinus dragarum Holotype m (A), 49.52 mm SL from the Arrat-Devant Stream, Manent-Montané 43°20.7'N, 0°37.5'E, MNHN 2019-0262; paratypes m (B) and f (C), same location as holotype, MNHN 2014-2725; nuptial colouration pattern for male (D) and female (E).
Figure 9. – Phoxinusfayollarum Holotype m in Revision of Phoxinus in France with the description of two new species (Teleostei, Leuciscidae)
Figure 9. – Phoxinusfayollarum Holotype m (A), 58.13 mm SL from the Boron Stream, Pionsat 46°06.4'N, 2°41.1'E, MNHN 2019-0263; paratypes m (B) and f (C), same location as holotype, MNHN 2014-2729; nuptial colouration pattern for male (D) and female (E).
Figure 6 in Revision of Phoxinus in France with the description of two new species (Teleostei, Leuciscidae)
Figure 6. – Phoxinus phoxinus in the Seine catchment: m from the Beuvron Stream, Ouagne 47°24'N, 3°29.7'E, MNHN 2014-2748 (A); f from the Oise Stream, Gergny 49°54.6'N, 3°56.1'E, MNHN 2014-2724 (B), nuptial colouration pattern for male (C) and female (D).
Figure 7 in Revision of Phoxinus in France with the description of two new species (Teleostei, Leuciscidae)
Figure 7. – Phoxinus septimaniae in the Rhône and Mediterranean catchments: m from the Luech Stream, Chamborigaud 44°19.7'N, 3°57.5'E, MNHN 2014-2804 (A); f from the Hérault River, Valleraugue 44°05.2'N, 3°36.3'E, MNHN 2014-2736 (B); nuptial col- ouration pattern for male (C) and female (D).
Figure 3 in Revision of Phoxinus in France with the description of two new species (Teleostei, Leuciscidae)
Figure 3. – Phylogenetic tree by Bayesian inference with the COI marker (592 bp) on 482 sequences of Phoxinus spp. (A) with a focus on the P. septimaniae clade (B). Coloured boxes represent evolutionary lineages containing French specimens. Bold vertical bars represent ABGD delineations. Red asterisks represent specimen with a completely scaled breast. Posterior probabilities values are indicated above the nodes.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.