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36 results for “Phylogenetic Nomenclature”
FIGURE 4 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 4. (A) Dorsal and (B) ventral views of the skull of Rondonops biscutatus (CHUNB 23454). Scale bar = 1 mm.
FIGURE 8 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 8. (A) View of a flooded forest near Igarapé-Açu, right bank of Rio Abacaxis, Nova Olinda do Norte, Amazonas Brazil; (B) terra firme forest at Igarapé-Açu; (C) holotype of Rondonops xanthomystax in life. (D) Closer view of the same specimen.
FIGURE 3 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 3. (A) Sulcate, (B) lateral and (C) asulcate faces of the right hemipenis of Rondonops biscutatus (CHUNB 18738).
FIGURE 7 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 7. Rondonops xanthomystax, holotype, MZUSP 98085, adult female, SVL 67 mm. (A) Lateral view of head; (B) ventral view of the head; (C) dorsal view of the head.
FIGURE 6 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 6. Geographic distribution of Rondonops biscutatus (triangles) and R. xanthomystax (circles). 1,2: Borba and Nova Olinda do Norte, 3: Novo Progresso, 4: Alta Floresta, 5: Guajará-Mirim, 6: Pimenta Bueno, 7: Alta Floresta d'Oeste, 8: Cerejeiras, 9: Itaituba, 10: Jacareacanga. AM: Amazonas, MT: Mato Grosso, PA: Pará, RO: Rondônia.
FIGURE 1 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 1. Rondonops biscutatus, holotype, CHUNB 18739, adult male, SVL 56 mm. (A) Dorsal view of head; (B) lateral view of the head; (C) ventral view of the head; (D) precloacal plate and femoral pores at each side.
FIGURE 10 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 10. Maximum likelihood topology for the DNA-only dataset. The parsimony bootstrap values are shown above the branches or horizontal line; these values apply to this particular tree and do not indicate that the parsimony analysis supported these nodes most strongly. The Bayesian posterior probabilities are shown below branches. Asterisks represent bootstrap values of 100% or Bayesian posterior probabilities of 1. The dots refer to the names of the higher taxa.
FIGURE 5 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 5. (A) Right hand, (B) hyoid, (C) right foot, (D) pectoral, and (E) pelvic girdles of Rondonops biscutatus (CHUNB 23454). Scale bars = 1 mm.
FIGURE 9 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 9. Bayesian phylogenies of the combined DNA and morphology dataset (left) and the morphological dataset only (right). The parsimony bootstrap values are shown above the branches or horizontal line; these values apply to this particular tree and do not indicate that the parsimony analysis supported these nodes most strongly. The Bayesian posterior probabilities are shown below the branches or horizontal line. In the tree on the right, the polytomies were formed by collapsing those nodes with <50% posterior probability. The dots refer to the names of the higher taxa.
FIGURE 2 in Description and phylogenetic relationships of a new genus and two new species of lizards from Brazilian Amazonia, with nomenclatural comments on the taxonomy of Gymnophthalmidae (Reptilia: Squamata)
FIGURE 2. (A) Flooded forest in Alta Floresta d'Oeste, Rondônia, Brazil, depicting termite nests on tree trunks, used as shelter by Rondonops biscutatus during the wet season. (B) Flooded forest in Cerejeiras, Rondônia, Brazil, during the dry season, depicting array of pitfall traps with drift fences, used to capture R. biscutatus. (C) Rondonops biscutatus, adult female. (D) Rondonops biscutatus, adult male.
Figure 3 in Unifying systematics and taxonomy: Nomenclatural changes to Nearctic tiger beetles (Coleoptera: Carabidae: Cicindelinae) based on phylogenetics, morphology and life history
Figure 3. In situ photographs of Apterodela spp. A) Apterodela ovipennis (Asia). B) Apterodela unipunctata (North America).
Figure 2 in Unifying systematics and taxonomy: Nomenclatural changes to Nearctic tiger beetles (Coleoptera: Carabidae: Cicindelinae) based on phylogenetics, morphology and life history
Figure 2. Representative dorsal habitus of Parvindela new genus. A) Parvindela debilis (type species. B) Parvindela terricola. C) Parvindela celeripes.
Figure 1 in Unifying systematics and taxonomy: Nomenclatural changes to Nearctic tiger beetles (Coleoptera: Carabidae: Cicindelinae) based on phylogenetics, morphology and life history
Figure 1. Maximum-likelihood phylogenetic hypothesis for North American lineages Ellipsoptera, Dromochorus, Brasiella, and Cylindera. Maximum-likelihood phylogeny inferred in IQ-TREE based on three mitochondrial fragments (16S, COX3 and CytB). Taxon naming follows previous naming conventions with different colors highlighting new generic groupings we propose. * denotes the C. lemniscata specimen from GenBank and † denotes the chimera specimen.
Figure 3 in Unifying systematics and taxonomy: Nomenclatural changes to Nearctic tiger beetles (Coleoptera: Carabidae: Cicindelinae) based on phylogenetics, morphology and life history
Figure 3. In situ photographs of Apterodela spp. A) Apterodela ovipennis (Asia). B) Apterodela unipunctata (North America).
Figure 2 in Unifying systematics and taxonomy: Nomenclatural changes to Nearctic tiger beetles (Coleoptera: Carabidae: Cicindelinae) based on phylogenetics, morphology and life history
Figure 2. Representative dorsal habitus of Parvindela new genus. A) Parvindela debilis (type species. B) Parvindela terricola. C) Parvindela celeripes.
Figure 1 in Unifying systematics and taxonomy: Nomenclatural changes to Nearctic tiger beetles (Coleoptera: Carabidae: Cicindelinae) based on phylogenetics, morphology and life history
Figure 1. Maximum-likelihood phylogenetic hypothesis for North American lineages Ellipsoptera, Dromochorus, Brasiella, and Cylindera. Maximum-likelihood phylogeny inferred in IQ-TREE based on three mitochondrial fragments (16S, COX3 and CytB). Taxon naming follows previous naming conventions with different colors highlighting new generic groupings we propose. * denotes the C. lemniscata specimen from GenBank and † denotes the chimera specimen.
Fig. 12 in Optimality of phylogenetic nomenclatural procedures
Fig. 12 Nonsensical statement under branch-based definitions, examples with cases involving 4 species. The taxon under scrutiny is defined as>B∼A (i.e. as 'the clade consisting of B and all organisms or species that share a more recent ancestor with B than with A', or as 'the most inclusive clade containing B but not A'); for further explanations, see text
Fig. 8 in Optimality of phylogenetic nomenclatural procedures
Fig. 8 Variations of the inferred ancestral character states under cladotypic procedure, in relation to alternative phylogenetic hypotheses (A–G are species); the two tress are assumed to be produced from a single matrix (though the latter could not be designed). Definition of taxon T under scrutiny involves character state 1 as exhibited by species B and C; lineages designated by the definition are indicated by bold lines; for further explanations, see text
Fig. 1 in Optimality of phylogenetic nomenclatural procedures
Fig. 1 Retrieval of hierarchy information based on a ranked taxonomy using standardized endings, case of balanced topology representing relationships among eight genera (A–H; I–N are more
Fig. 6 in Optimality of phylogenetic nomenclatural procedures
Fig. 6 Variations of the inferred ancestral character states under nodebased procedure, in relation to alternative phylogenetic hypotheses (A–G are species); case of a given character state matrix providing two equally most parsimonious trees. Taxon T under scrutiny is the one
ScienceDex guides
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OpenNeuro
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