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opencc-by-nc-sa-1.0Feb 2020View details →

Data of "Investigating the potential for genetic improvement of nitrogen and phosphorus efficiency of in a Swiss Large White pigs population using chemical analysis"

Data for article 'Investigating the Potential for Genetic Improvement of Nitrogen and Phosphorus Efficiency in a Swiss Large White Pig Population using Chemical Analysis' (DOI: 10.1111/JBG.12472). Dataset of 294 Swiss Large White pigs for which phenotypes of nitrogen efficiency, phosphorus efficiency (both determined by chemical analysis of N and P content of empty body and carcass as well as the feed ingested over the experiment phase), average daily gain and gain:feed ratio are available. We also provide the pedigree that was used to estimate genetic parameters in animal models and a description of the variables (metadata).

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Lithuania

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_LT - State Food and Veterinary Service (SFVS)</li> <li>ASF2023_POP_EXTRACTION_LT - State Food and Veterinary Service (SFVS)</li> <li>ASF2022_POP_EXTRACTION_LT - State Food and Veterinary Service (SFVS)*</li> <li>ASF2022_POP_EXTRACTION_LT - State Food and Veterinary Service (SFVS)</li> </ul>     *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Slovakia

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_SK - State Veterinary and Food Institute (SVPU)</li> <li>ASF2023_POP_EXTRACTION_SK - State Veterinary and Food Institute (SVPU)</li> <li>ASF2022_POP_EXTRACTION_SK - State Veterinary and Food Institute (SVPU)*</li> <li>ASF2022_POP_EXTRACTION_SK - State Veterinary and Food Institute (SVPU)</li> </ul>     *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Latvia

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_LV - Agricultural Data Centre (LDC)</li> <li>ASF2023_POP_EXTRACTION_LV - Agricultural Data Centre (LDC)</li> <li>ASF2022_POP_EXTRACTION_LV - Agricultural Data Centre (LDC)*</li> <li>ASF2022_POP_EXTRACTION_LV - Agricultural Data Centre (LDC)</li> </ul>     *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Italy

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_IT - Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise (IZSAM)</li> <li>ASF2023_POP_EXTRACTION_IT - Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise (IZSAM)</li> <li>ASF2022_POP_EXTRACTION_IT - Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise (IZSAM)*</li> <li>ASF2022_POP_EXTRACTION_IT - Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise (IZSAM)</li> </ul>     *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Estonia

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_EE - Agricultural Registers and Information Board (ARIB)</li> <li>ASF2023_POP_EXTRACTION_EE - Agricultural Registers and Information Board (ARIB)</li> <li>ASF2022_POP_EXTRACTION_EE - Agricultural Registers and Information Board (ARIB)*</li> <li>ASF2022_POP_EXTRACTION_EE - Agricultural Registers and Information Board (ARIB)</li> </ul>     *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Romania

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_RO - National Sanitary Veterinary and Food Safety Authority (ANSVSA)</li> <li>ASF2023_POP_EXTRACTION_RO - National Sanitary Veterinary and Food Safety Authority (ANSVSA)</li> <li>ASF2022_POP_EXTRACTION_RO - National Sanitary Veterinary and Food Safety Authority (ANSVSA)*</li> <li>ASF2022_POP_EXTRACTION_RO - National Sanitary Veterinary and Food Safety Authority (ANSVSA)</li> </ul>   *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - North Macedonia

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_MK - Food and Veterinary Agency (FVA)</li> <li>ASF2023_POP_EXTRACTION_MK - Food and Veterinary Agency (FVA)</li> <li>ASF2022_POP_EXTRACTION_MK - Food and Veterinary Agency (FVA)*</li> <li>ASF2022_POP_EXTRACTION_MK - Food and Veterinary Agency (FVA)</li> </ul>     *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

opencc-by-4.0May 2024View details →

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Greece

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_GR - Hellenic Ministry of Rural Development and Food (MINAGRIC)</li> <li>ASF2023_POP_EXTRACTION_GR - Hellenic Ministry of Rural Development and Food (MINAGRIC)</li> </ul>

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Poland

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_PL - Agency for Restructuring and Modernisation of Agriculture (ARMA)</li> <li>ASF2023_POP_EXTRACTION_PL - Agency for Restructuring and Modernisation of Agriculture (ARMA)</li> <li>ASF2022_POP_EXTRACTION_PL - Agency for Restructuring and Modernisation of Agriculture (ARMA)*</li> <li>ASF2022_POP_EXTRACTION_PL - Agency for Restructuring and Modernisation of Agriculture (ARMA)</li> </ul>     *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Czechia

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2024_POP_EXTRACTION_CZ - State Veterinary Administration (SVA)</li> <li>ASF2023_POP_EXTRACTION_CZ - State Veterinary Administration (SVA)</li> <li>ASF2022_POP_EXTRACTION_CZ - State Veterinary Administration (SVA)*</li> <li>ASF2022_POP_EXTRACTION_CZ - State Veterinary Administration (SVA)</li> </ul>     *This version of the animal population data has been republished with the establishment and subnit identification code (estabId, subUnitId) columns empty due to data protection reasons

Pig population data complementing the annual report on the epidemiological analyses of African swine fever (ASF) in the European Union - Bulgaria

This dataset contains swine population data. Reporting authorities contributing to the data collection: <ul> <li>ASF2022_BG - Bulgarian Food Safety Agency (BFSA)</li> </ul>

opennotspecifiedAug 2011View details →

zenodo32/100

Subspecies and Distribution. S. s. scrofa Linnaeus, 1758 — W Europe, from Denmark, Germany, Poland, and Czech Republic to N Italy and N Iberian Peninsula; possibly also Albania. The taxonomic status of animals in Austria, Switzerland, Slovenia, and Slovakia is unclear but presumably these populations are included in scrofa, as are the populations of Sweden, Finland, and the Baltic states. However, restocking of once depleted populations, for example in Italy, has likely involved the introduction and mixing of this subspecies with other subspecies, such as attila. S. s. affinis Gray, 1847 — S India and Sri Lanka. S. s. algirus Loche, 1867 — Tunisia, Algeria, and Morocco, on the coastal side of the mountains or in the low montane areas. S. s. attila Thomas, 1912 — Hungary, Ukraine, C & S Belarus, Romania, Moldova, and S Russia towards the N flank of the Caucasus, but not including the Transcaucasian countries of Georgia, Armenia, and Azerbaijan. The range possibly extends as far S as the Mesopotamian Delta in Iraq, in which case it would likely include W & SW Iran, and possibly E Turkey and Syria, where it borders with lybicus. Such a range could not be easily reconciled with a statement by Groves that "the difference between pigs from N and S of the Caucasus is quite striking; Transcaucasian boars are certainly not attila." This subspecies may also extend into C Asia and include Kazakhstan, Uzbekistan, and Turkmenistan, but no data exist to support this. S. s. baeticus Thomas, 1912 — originally described from Coto Donana, S Spain, and later merged with meridionalis; also S Portugal. Unless evidence is found that these Italian and Iberian populations are the relics of a much larger formerly contiguous range, this subspecies should be kept as distinct. S. s. coreanus Heude, 1897 — Korean Peninsula. S. s. eristatus Wagner, 1839 — Himalayas S to C India and E to Indochina (N of the Kra Isthmus). S. s. davidi Groves, 1981 — the arid zone from E Iran to Gujarat, including Pakistan and NW India, and perhaps N to Tajikistan. S. s. leucomystax Temminck, 1842 — main Is ofJapan (Honshu, Shikoku, Kyushu, Nakadori, Hiburijima, Tojima, Kushima, and other smaller Is). S. s. lybicus Gray, 1868 — Bulgaria, Greece, Turkey, Syria, Jordan, Israel, Palestine, in the past also in Lybia, and Egypt. The former Yugoslavia was included in its range, which would suggest that now Slovenia, Serbia, Croatia, Bosnia and Herzegovina, Montenegro, and Kosovo are within the range of this subspecies, although the exact boundaries are unclear. Pigs from Albania have been assigned to S. s. scrofa. S. s. majori De Beaux & Festa, 1927 — C & S Italian Peninsula. S. s. menidionalis Forsyth Major, 1882 — Corsica and Sardinia, with the proviso that the two populations are very likely to be introduced or feral. S. s. moupinensis Milne-Edwards, 1871 — China, S to Vietnam and W to Sichuan. S. s. nigripes Blanford, 1875 — the flanks of the Tianshan mountains in Kyrgyzstan and NW China (Xinjiang). An animal photographed in NE Iran (Golestan) looked like this subspecies. S. s. nukiuanus Kuroda, 1924 — Iriomote, Ishigaki, Okinawa, Tokunoshima, Amamioshima, and Kakerome Is in the Ryukyu chain in extreme S Japan, though some of these populations have hybridized with introduced domesticates. S. s. sibiricus Staffe, 1922 — Mongolia and Transbaikal (S & E of Lake Baikal). S. s. tawvanus Swinhoe, 1863 — Taiwan. S. s. ussuricus Heude, 1888 — far E Russia and the Manchurian region (China). Korean populations were previously included in this subspecies, but based on new evidence, the Korean taxon seems more similar to moupinensis. S. s. vittatus Boie, 1828 — Malay Peninsula, S of the Isthmus of Kra, the offshore islands of Terutai and Langkawi, Sumatra, Riau Archipelago, Java, Bali, and a range of smaller islands around these, including Babi, Bakong, Batam, Bawean, Bengkalis, Bintan, Bulan, Bunguran, Cuyo, Deli, Durian, Enggano, Galang, Jambongan, Karimon (Riau Is), Kundur, Lagong, Laut, Lingga, Lingung, Mapor, Moro Kecil, North Pagai, Nias, Panaitan, Payong, Penang, Pinie, Rupat, Siantan, Siberut, Simeulue, Singkep, Sugi, Sugi Bawa, Telibon, Tinggi, Tuangku, and the Tambelan Is. This species was originally present from the British Is in the extreme W, through Eurasia from S Scandinavia to S Siberia, extending as far E as Korea and Japan, and SE into some of the Sunda Is and Taiwan. In the S the species ranged along the Nile Valley to Khartoum, and N of the Sahara in Africa, more orless following the continental coasts of S, E, and SE Asia. Within this range it was absent only from extremely dry deserts, e.g. the driest regions of Mongolia and in China W of Sichuan; and alpine zones, such as the high altitudes of Pamir and Tien Shan. In recent centuries, the range of S. scrofa has changed dramatically because of hunting and changes in available habitat. The species disappeared from the British Is in the 17" century, from Denmark in the 19" century, and was greatly reduced in range and numbers in the 20" century from areas as distant as Tunisia, Sudan, Germany, and Russia. Following these severe declines, there were some slight population recoveries in Russia, Italy, Spain, and Germany in the mid-20™ century, and natural and assisted range expansions in Denmark and Sweden. The species has also been inadvertently reintroduced in various locations in the Great Britain via escapees of mixed origin from commercial farming enterprises. Ex-S. scrofa stocks also occur as introduced feral populations in various other parts of the world, including Australia, New Zealand, the eastern Malay Archipelago, and in North, Central, and South America. In all of these areas they are now generally recognized as a major pest. in Suidae

Subspecies and Distribution. S. s. scrofa Linnaeus, 1758 — W Europe, from Denmark, Germany, Poland, and Czech Republic to N Italy and N Iberian Peninsula; possibly also Albania. The taxonomic status of animals in Austria, Switzerland, Slovenia, and Slovakia is unclear but presumably these populations are included in scrofa, as are the populations of Sweden, Finland, and the Baltic states. However, restocking of once depleted populations, for example in Italy, has likely involved the introduction and mixing of this subspecies with other subspecies, such as attila. S. s. affinis Gray, 1847 — S India and Sri Lanka. S. s. algirus Loche, 1867 — Tunisia, Algeria, and Morocco, on the coastal side of the mountains or in the low montane areas. S. s. attila Thomas, 1912 — Hungary, Ukraine, C & S Belarus, Romania, Moldova, and S Russia towards the N flank of the Caucasus, but not including the Transcaucasian countries of Georgia, Armenia, and Azerbaijan. The range possibly extends as far S as the Mesopotamian Delta in Iraq, in which case it would likely include W & SW Iran, and possibly E Turkey and Syria, where it borders with lybicus. Such a range could not be easily reconciled with a statement by Groves that "the difference between pigs from N and S of the Caucasus is quite striking; Transcaucasian boars are certainly not attila." This subspecies may also extend into C Asia and include Kazakhstan, Uzbekistan, and Turkmenistan, but no data exist to support this. S. s. baeticus Thomas, 1912 — originally described from Coto Donana, S Spain, and later merged with meridionalis; also S Portugal. Unless evidence is found that these Italian and Iberian populations are the relics of a much larger formerly contiguous range, this subspecies should be kept as distinct. S. s. coreanus Heude, 1897 — Korean Peninsula. S. s. eristatus Wagner, 1839 — Himalayas S to C India and E to Indochina (N of the Kra Isthmus). S. s. davidi Groves, 1981 — the arid zone from E Iran to Gujarat, including Pakistan and NW India, and perhaps N to Tajikistan. S. s. leucomystax Temminck, 1842 — main Is ofJapan (Honshu, Shikoku, Kyushu, Nakadori, Hiburijima, Tojima, Kushima, and other smaller Is). S. s. lybicus Gray, 1868 — Bulgaria, Greece, Turkey, Syria, Jordan, Israel, Palestine, in the past also in Lybia, and Egypt. The former Yugoslavia was included in its range, which would suggest that now Slovenia, Serbia, Croatia, Bosnia and Herzegovina, Montenegro, and Kosovo are within the range of this subspecies, although the exact boundaries are unclear. Pigs from Albania have been assigned to S. s. scrofa. S. s. majori De Beaux & Festa, 1927 — C & S Italian Peninsula. S. s. menidionalis Forsyth Major, 1882 — Corsica and Sardinia, with the proviso that the two populations are very likely to be introduced or feral. S. s. moupinensis Milne-Edwards, 1871 — China, S to Vietnam and W to Sichuan. S. s. nigripes Blanford, 1875 — the flanks of the Tianshan mountains in Kyrgyzstan and NW China (Xinjiang). An animal photographed in NE Iran (Golestan) looked like this subspecies. S. s. nukiuanus Kuroda, 1924 — Iriomote, Ishigaki, Okinawa, Tokunoshima, Amamioshima, and Kakerome Is in the Ryukyu chain in extreme S Japan, though some of these populations have hybridized with introduced domesticates. S. s. sibiricus Staffe, 1922 — Mongolia and Transbaikal (S & E of Lake Baikal). S. s. tawvanus Swinhoe, 1863 — Taiwan. S. s. ussuricus Heude, 1888 — far E Russia and the Manchurian region (China). Korean populations were previously included in this subspecies, but based on new evidence, the Korean taxon seems more similar to moupinensis. S. s. vittatus Boie, 1828 — Malay Peninsula, S of the Isthmus of Kra, the offshore islands of Terutai and Langkawi, Sumatra, Riau Archipelago, Java, Bali, and a range of smaller islands around these, including Babi, Bakong, Batam, Bawean, Bengkalis, Bintan, Bulan, Bunguran, Cuyo, Deli, Durian, Enggano, Galang, Jambongan, Karimon (Riau Is), Kundur, Lagong, Laut, Lingga, Lingung, Mapor, Moro Kecil, North Pagai, Nias, Panaitan, Payong, Penang, Pinie, Rupat, Siantan, Siberut, Simeulue, Singkep, Sugi, Sugi Bawa, Telibon, Tinggi, Tuangku, and the Tambelan Is. This species was originally present from the British Is in the extreme W, through Eurasia from S Scandinavia to S Siberia, extending as far E as Korea and Japan, and SE into some of the Sunda Is and Taiwan. In the S the species ranged along the Nile Valley to Khartoum, and N of the Sahara in Africa, more orless following the continental coasts of S, E, and SE Asia. Within this range it was absent only from extremely dry deserts, e.g. the driest regions of Mongolia and in China W of Sichuan; and alpine zones, such as the high altitudes of Pamir and Tien Shan. In recent centuries, the range of S. scrofa has changed dramatically because of hunting and changes in available habitat. The species disappeared from the British Is in the 17" century, from Denmark in the 19" century, and was greatly reduced in range and numbers in the 20" century from areas as distant as Tunisia, Sudan, Germany, and Russia. Following these severe declines, there were some slight population recoveries in Russia, Italy, Spain, and Germany in the mid-20™ century, and natural and assisted range expansions in Denmark and Sweden. The species has also been inadvertently reintroduced in various locations in the Great Britain via escapees of mixed origin from commercial farming enterprises. Ex-S. scrofa stocks also occur as introduced feral populations in various other parts of the world, including Australia, New Zealand, the eastern Malay Archipelago, and in North, Central, and South America. In all of these areas they are now generally recognized as a major pest.

dryad32/100

Data from: Genome-wide single nucleotide polymorphism analysis reveals recent genetic introgression from domestic pigs into Northwest European wild boar populations

Open the record for dataset details and reuse information.

publicMay 2012View details →

opencc-zeroDec 2014View details →

Data from: Genome-wide association analysis for blood lipid traits measured in three pig populations revealed a substantial level of genetic heterogeneity

Serum lipids are associated with myocardial infarction and cardiovascular disease in humans. Here we dissected the genetic architecture of blood lipid traits by applying genome-wide association studies (GWAS) in 1,256 pigs from Laiwu, Erhualian and Duroc × (Landrace × Yorkshire) populations, and a meta-analysis of GWAS in more than 2,400 pigs from five diverse populations. A total of 22 genomic loci surpassing the suggestive significance level were detected on 11 pig chromosomes (SSC) for six blood lipid traits. Meta-analysis of GWAS identified 5 novel loci associated with blood lipid traits. Comparison of GWAS loci across the tested populations revealed a substantial level of genetic heterogeneity for porcine blood lipid levels. We further evaluated the causality of nine polymorphisms nearby or within the APOB gene on SSC3 for serum LDL-C and TC levels. Of the 9 polymorphisms, an indel showed the most significant association with LDL-C and TC in Laiwu pigs. But the significant association was not identified in the White Duroc × Erhualian F2 resource population, in which the QTL for LDL-C and TC was also detected on SSC3. This indicates that population-specific signals may exist for the SSC3 QTL. Further investigations are warranted to validate this assumption.

opencc-zeroDec 2013View details →

Data from: Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations

The merging of populations after an extended period of isolation and divergence is a common phenomenon, in natural settings as well as due to human interference. Individuals with such hybrid origins contain genomes that essentially form a mosaic of different histories and demographies. Pigs are an excellent model species to study hybridization because European and Asian wild boars diverged ~1.2 Mya and pigs were domesticated independently in Europe and Asia. During the Industrial Revolution in England, pigs were imported from China to improve the local pigs. This study utilizes the latest genomics tools to identify the origin of haplotypes in European domesticated pigs that are descendant from Asian and European populations. Our results reveal fine-scale haplotype structure representing different ancient demographic events, as well as a mosaic composition of those distinct histories due to recently introgressed haplotypes in the pig genome. As a consequence, nucleotide diversity in the genome of European domesticated pigs is higher when at least one haplotype of Asian origin is present, and haplotype length correlates negatively with recombination frequency and nucleotide diversity. Another consequence is that the inference of past effective population size is influenced by the background of the haplotypes in an individual, but we demonstrate that by careful sorting based on the origin of haplotypes both distinct demographic histories can be reconstructed. Future detailed mapping of the genomic distribution of variation will enable a targeted approach to increase genetic diversity of captive and wild populations, thus facilitating conservation efforts in the near future.

publicJun 2014View details →

Data from: Untangling the hybrid nature of modern pig genomes: a mosaic derived from biogeographically distinct and highly divergent Sus scrofa populations

Open the record for dataset details and reuse information.