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Data sets for Polyplax serrata article "Highly-resolved genomes of two closely related lineages of the rodent louse Polyplax serrata with different host specificities"

<p><strong>Supplementary data for Polyplax serrata article 2023</strong></p> <p>Data included in this repository were generated and used in various genomic and phylogenetic analysis presented by the publication "<strong>Highly-resolved genomes of two closely related lineages of the louse </strong><em><strong>Polyplax serrata</strong></em><strong> with different host specificities</strong>"</p> <p><strong>Description of the data and file structure</strong></p> <p>Data provided for each analyzed taxa include:</p> <p>-&nbsp; Annotation table.</p> <p>-&nbsp; fasta format files for transcripts (CDS and mRNA).</p> <p>-&nbsp; fasta format file for genome.</p> <p>-&nbsp; protein fasta file.</p> <p>-&nbsp; gbk format file that includes the genome with its corresponding annotations.</p> <p>Additionally,</p> <p>- repeat families in fasta format were included for&nbsp;<em>Polyplax serrata</em> S and N lineages.</p> <p>- rRNA in fasta format were included for <em>Polyplax serrata</em> S and N lineages, <em>Pediculus humanus, Columbicola columbae </em>and <em>Brueelia nebulsa</em>.&nbsp;</p> <p><strong>Sharing/Access information</strong></p> <p>GenBank accession number of analyzed taxa:</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Aedes Aegypti</em> (GenBank accession no. GCF_002204515.2).</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Brueelia nebulsa</em> ( GenBank accession no. GCA_028293925.1).</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Columbicola columbae</em> (GenBank accession no. GCA_016920875.1).</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Cimex lectularis</em> (GenBank accession no. GCF_000648675.2).</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Glossina morsitans</em> (GenBank accession no. GCA_001077435.1).</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Pediculus humanus</em> (GenBank accession no. GCA_000006295.1).</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Rhodnius prolixus</em> (GenBank accession no. GCA_000181055.3).</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Polyplax serrata S lineage</em> (GenBank accession no. JAWJWF000000000).</p> <p>&middot;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; <em>Polyplax serrata N lineage</em> (GenBank accession no. JAWJWE000000000).</p> <p>&nbsp;</p> <p>Note: All the latter genomes except for the two genomes of <em>Polyplax serrata</em> S and N lineages, were acquired from GenBank database and were subjected to the same gene prediction and annotation workflow as <em>P. serrata</em> genomes to maintain methodological consistence in downstream analysis of the annotation results.</p> <p><strong>Software</strong></p> <p>- Gene prediction and annotation was performed using Funannotate v1.18.14 (<a href="https://github.com/nextgenusfs/funannotate">https://github.com/nextgenusfs/funannotate)</a>).</p> <p>- Repeat were identified in the genomes of P. serrata S and N lineages using RepeatModeler v2.0.3.</p>