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Recruitment data from 1997 to 2021 for mussels, barnacles and rockweeds from an LTREB project in the Gulf of Maine, USA
Experimental clearings in macroalgal (Ascophyllum nodosum) stands were made in 1996 to determine if mussel beds and macroalgal stands on protected intertidal shores in New England represent alternative community states. Uncleared control plots and four sizes of circular clearings (1m, 2m, 4m and 8m in diameter), which mimicked ice scour events, were established in A. nodosum stands at 12 sites on Swan’s Island, Maine, USA. The purpose of these datasets is to provide access to data on recruitment of mussels, barnacles and fucoid seaweeds in the 60 experimental plots from 1997 to 2021. Earlier versions of the data prior to 2013 can be found in Ecological Archives (E090-039 and E096-274). This EDI version includes corrections of errors in the versions in Ecological Archives. Research was funded by NSF's LTREB program.
Survey of Pacific Northwest public land managers science and values project, 2023
This dataset records survey data about public land managers who work in Oregon and Washington (Forest Service, Bureau of Land Management, Fish and Wildlife Service, National Park Service, Oregon Department of Forestry, Washington Department of Natural Resources). Data was collected in 2023 via the online survey platform Qualtrics. Data collection is complete. The dataset includes measures of managers beliefs about 1) variable density thinning of mature growth forests, 2) salvage logging of burned areas, 3) translocation of plant species from hotter and drier seed zones to adapt to climate change. It includes how managers evaluate the usefulness of scientific evidence and the soundness of action prescriptions for each of the three management issues Respondents were randomly assigned to either receive long-term or short-term studies, and positive or negative results. The dataset includes measures of sense of belonging (how much managers believe they belong at their workplace) and measures of public support/public threat (how much they believe the public understands and supports the actions they take on the landscape). The dataset includes respondent agency.
Long-term Plant Biomass Monitoring Data from the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia
The Georgia Coastal Ecosystems LTER program (GCE) monitors plant biomass annually with the goal of testing the hypothesis that end-of-year biomass varies as a function of 1) freshwater discharge from the Altamaha River (especially in low-marsh plots), 2) local rainfall (especially in high-marsh plots), and 3) average sea level. In 2000 we created permanent plots at all 10 GCE marsh monitoring sites. Plots were established at creek-bank and mid-marsh sites (8 plots per zone per site). Most sites are dominated by Spartina alterniflora (smooth cordgrass), but zones at some sites are dominated by Juncus roemerianus, Spartina cynosuroides, or Zizaniopsis miliacea. An additional marsh zone (high marsh Juncus) was established at site 10 in 2005 and site 9 in 2012 to increase replication of sites with Juncus. Plants have been non-destructively monitored in October of every year from 2000 to the present, measuring the stem count, height and flowering status of every plant in each plot. Stem clipping samples were also collected adjacent to plots in 2002, 2007, and 2020, then measured, dried, weighed and statistically analyzed in order to generate allometric regression relationships between height and mass for estimation of plant biomass in corresponding plots. This data set includes cumulative long-term observations of plant stem count, height and biomass per marsh zone, plot and species at 10 GCE LTER sampling sites from 2000 to 2023, and will be updated annually to include the prior year observations.
Long-term Plant Biomass Monitoring Data from Altamaha River Plant Transition Sites near the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia
The Georgia Coastal Ecosystems LTER program (GCE) monitors plant biomass annually to measure the species and size distribution of plants at 3 sampling sites on the creekbank of the Altamaha River. The sites were chosen to capture the transition from Spartina alterniflora to Spartina cynosuroides (site SCSA) and the transition from Spartina cynosuroides to Zizaniopsis miliacea (sites ZSC1 and ZSC2). The quadrats were established as permanent plots in October 2012 by placing PVC stakes along the creekbank at each site. Plots were evenly spaced, but were not randomly located because the goal was to start with mixtures of vegetation in most of the plots, and vegetation was distributed in patches along the creekbanks. Therefore, these plots provide useful measures of vegetation change, but are not a random sample of the vegetation at the site. Plots will be replaced each year as necessary to replace any lost to disturbance. The plots were visually surveyed and the species, shoot height, and flowering status was recorded individually for each shoot over 10 cm in height present in each plot. Observations from plots exhibiting signs of disturbance were noted in a separate data set (PLT-GCEM-1801c). This data set includes cumulative long-term observations of plant stem count, height and biomass per plot and species at 3 Altamaha River transition sites from 2012 to 2023, and will be updated annually to include the prior year observations.
Cascade project at North Temperate Lake LTER – Daily Respiration Data for Whole Lake Nutrient Additions 2013-2015
Daily estimates of ecosystem respiration and values of covariates from surface waters of Paul, Peter, and Tuesday lakes from mid-May to early September for the years 2013, 2014, and 2015. Inorganic nitrogen and phosphorus were added to Peter and Tuesday lakes each year while Paul Lake was an unfertilized reference.
Lower American River restoration snorkel surveys at the project and control reaches
Sacramento Water Forum will implement spawning and rearing habitat enhancement projects on the Lower American River at the Lower Sailor Bar, Nimbus Basin, and Upper River Bend reaches. Enhancements include installation of gravel to restore over 18 acres of spawning habitat and in-channel/floodplain grading to create over 14 acres of rearing habitat. Construction of Lower Sailor Bar and Nimbus Basin were completed in summer 2022 and Upper River Bend was completed in summer 2023.The goal of the projects is to increase existing spawning and rearing habitat for salmonids under typical flows. This work supports effectiveness monitoring for this project, including spawning and rearing (snorkel) surveys before and after restoration. This work also informs performance metrics and adaptive management strategies.
Projected Snow Cover Reductions and Mid-latitude Cyclone Responses in the North American Great Plains, 1986 - 2005
Extratropical cyclones are responsible for major weather events and trends in the mid-latitudes and preferentially develop in regions of enhanced cyclogenesis and proceed along climatological storm tracks. It has been shown that terrestrial snow cover exerts considerable influence on atmospheric baroclinicity which is largely responsible for the aforementioned cyclogeneses and storm tracks. Research about the effect which terrestrial snow cover exerts on cyclones' intensities, trajectories, and precipitation characteristics is limited but indicates a robust relationship with these factors. Many examinations of climate model projections have generally shown a poleward shift in storm tracks by the late 21st century though none have determined the degree to which the coincident poleward shift in snow extent is responsible. A method of imposing 10th, 50th, and 90th percentile values of snow retreat between the late 20th and 21st centuries as projected by 14 models of the Coupled Model Intercomparison Project Phase Five (CMIP5) is used to alter 20 historical cold season cyclones which tracked over or adjacent to the North American Great Plains. Simulations by the Advanced Research version of the Weather Research and Forecast Model (WRF-ARW) are initialized at 0 to 4 days prior to cyclogenesis. Including control and sensitivity testing wherein snow is unaltered or removed entirely, each cyclone case is simulated 25 times for a total of 500 simulations.
Long-term soil salinity and organic content from the Georgia Coastal Ecosystems LTER Project on Sapelo Island, Georgia
Soil samples were collected in conjunction with annual plant monitoring at half of the permanent vegetation monitoring plots in the creekbank and midmarsh zones at 10 GCE study sites beginning in 2009. Pore-water salinity was determined by analysis of supernatant salinity in dried soil samples hydrated with a measured volume of deionized water. Organic content was measured gravimetrically by comparing ash-free dry weight and total weight of soil samples.
Percent cover measurements of four site-dominant species from the GCE-LTER Seawater Addition Long-Term Experiment (SALTEx) Project
SALTEx (Seawater Addition Long-Term Experiment) is a field experiment designed to simulate saltwater intrusion in a tidal freshwater wetland to predict how chronic (Press) and acute (Pulse) salinization will affect this and other tidal freshwater ecosystems. The SALTEx experiment was initiated in 2012 and consists of 31 field plots, each 2.5 m on a side. There are three treatments (Press, Pulse, and Fresh) and two types of controls (with and without sides), each consisting of six replicates. The Press treatment plots receive regular (4 times each week) additions of a mixture of seawater and fresh river water. Pulse plots receive the same mixture of seawater and river water during September and October, which is historically a time of low flow in the river when natural saltwater intrusion occurs. The Fresh treatment plots receive regular additions of fresh river water. Treatment water is added during low tide to facilitate its infiltration into the soil, and all plots are inundated by astronomical tides at high tide. Percent cover was measured for four site-dominant species (Zizaniopsis miliacea, Pontederia cordata, Persicaria hydropiperoides, and Ludwigia repens) each July from 2013 to 2022.
Photosynthetic available radiation (PAR) measurements from the GCE-LTER Seawater Addition Long-Term Experiment (SALTEx) Project
SALTEx (Seawater Addition Long-Term Experiment) is a field experiment designed to simulate saltwater intrusion in a tidal freshwater wetland to predict how chronic (Press) and acute (Pulse) salinization will affect this and other tidal freshwater ecosystems. The SALTEx experiment was initiated in 2012 and consists of 31 field plots, each 2.5 m on a side. There are three treatments (Press, Pulse, and Fresh) and two types of controls (with and without sides), each consisting of six replicates. The Press treatment plots receive regular (4 times each week) additions of a mixture of seawater and fresh river water. Pulse plots receive the same mixture of seawater and river water during September and October, which is historically a time of low flow in the river when natural saltwater intrusion occurs. The Fresh treatment plots receive regular additions of fresh river water. Treatment water is added during low tide to facilitate its infiltration into the soil, and all plots are inundated by astronomical tides at high tide. Light availability was measured using photosynthetically active radiation (PAR) both above and below the plant canopy.
Belowground biomass measurements from the GCE-LTER Seawater Addition Long-Term Experiment (SALTEx) Project
SALTEx (Seawater Addition Long-Term Experiment) is a field experiment designed to simulate saltwater intrusion in a tidal freshwater wetland to predict how chronic (Press) and acute (Pulse) salinization will affect this and other tidal freshwater ecosystems. The SALTEx experiment was initiated in 2012 and consists of 31 field plots, each 2.5 m on a side. There are three treatments (Press, Pulse, and Fresh) and two types of controls (with and without sides), each consisting of six replicates. The Press treatment plots receive regular (4 times each week) additions of a mixture of seawater and fresh river water. Pulse plots receive the same mixture of seawater and river water during September and October, which is historically a time of low flow in the river when natural saltwater intrusion occurs. The Fresh treatment plots receive regular additions of fresh river water. Treatment water is added during low tide to facilitate its infiltration into the soil, and all plots are inundated by astronomical tides at high tide. Belowground biomass was sampled from in each plot in March 2017 after 3 years of dosing.
Litterfall, Biomass and Productivity in CRUI Land Use Project at Harvard Forest 1996-1997
Prior agricultural land use often plays an important role in the present condition of forests. This research was conducted to find any productivity differences among previously plowed, pastured, and woodlot sites. There are six sites, two from each of the land use types. With this research we wanted to estimate the productivity for each of the six stands and test the hypothesis that rates of annual aboveground biomass and annual litter fall in recovering forests would decline in the order woodlot - pastured - plowed. Twenty-five trees, of various diameters and species, were cored at each site. The cores were analyzed and the radial growth was calculated for the most recent 5 and 10 year intervals. Biomass increments were also calculated for the same time span using published allometric equations. Aboveground woody productivity was calculated for diameter classes within species and semi-log relationships of productivity per diameter were used to calculate the productivity of all trees in the stand that were not cored. Site-specific and species-specific equations were used. Litter fall was estimated by collecting litter from ten traps each in the six stands. Litter was sorted by species and reported on a dry matter basis. Red oaks and red maples were the major contributors of biomass and litter fall in all six of the stands, accounting for about seventy percent of the total aboveground biomass. Although woodlots had higher total biomass there was not a significant difference in productivity across the six sites. The range of productivity including both litter fall and aboveground woody production was from 7524-9014 Kg/ha. This fell into the range for temperate forests according to results published by the International Biological Program. Production per unit biomass was greater in the plowed stand and least in the woodlots.
Tree Canopy Leaf Area Index in CRUI Land Use Project at Harvard Forest 1997
Numerous variables related to land use disturbance and recovery processes can influence forest composition and structure. We’ve measured differences in forest communities in six sites that were formerly plowed, pastured, or continuously forested woodlots in Prospect Hill. None of the sites had noticeable canopy gap disturbance at the time of the measurements. Leaf area index (LAI) was measured with an LAI-2000 plant canopy analyzer (Li-Cor, Inc., Lincoln, NE) at all 77 edge and interior intersection points in the 30 m x 50 m permanent plot (7 columns x 11 rows) in 5 of our 6 land use sites. Under-canopy measurements were made in each site over 25-30 minutes during midday hours (11:00-2:30 EST) on overcast days near solstice (June 13, 18). The under-canopy readings were contrasted with an open-sky measurement taken in an open field near the Harvard Forest headquarters just before beginning data collection in each site. LAI averaged 3.98 and ranged from 2.28 to 5.93 across all sites. W1 had the highest site-level mean (4.62) and maximum (5.93) LAI while S2 had the lowest values (mean = 3.41, max = 4.55). The woodlot also showed the greatest spatial variation as measured by C.V., while plow #1 showed the least variation.
Canopy Sky Factors in CRUI Land Use Project at Harvard Forest 1998
Hemispherical photos were taken at 35 interior grid corners in each land use site’s 30 m x 50 m permanent plot on uniformly overcast days during summer 1998. A Canon A-1 35 mm camera with a 7.5 mm lens was mounted on a tripod, positioned so the film plane was 0.5 m above ground, oriented N-S with a compass, and leveled. Ektachrome 100 slide film was used. Two exposures were made for each location. The slides were processed and digitized in jpeg format by Kodak, Inc. at a resolution of 1536 x 1024 dpi. The jpeg images were screened for nearground obstructions. Fifteen of the 35 photo locations per site were used in subsequent analysis. Hemiview software (v. 2.0, Delta-T Devices Ltd., Cambridge, UK) was used to process the images and calculate indirect, direct, and global (= indirect + direct) sky factors for each sample location, plus the proportion of global sky factor represented by direct beam radiation. Several images spanning a wide range of canopy density were used to develop protocols for setting optimal thresholds in converting from color to black and white images. Each B/W image was then analyzed at three threshold levels, the optimum level plus 5 threshold units (~ 2.5%) above and below the optimum. The results were averaged across the three threshold levels to provide one set of sky factor data per sample location. Above-canopy incident radiation was calculated daily for the June-September growing season based on (1) latitude and longitude, (2) average atmospheric transmission, and (3) monthly averages for fractions of the day in diffuse radiation due to cloud cover for the Harvard Forest area. Data for 2 and 3 above were provided by researchers at the State University of New York at Albany. Below-canopy radiation was estimated daily across half-hour intervals as the sum of diffuse and direct beam components. Sky factors were then calculated from the above- and below-canopy radiation values and averaged both monthly and across the growing season.
Herbaceous Species in CRUI Land Use Project at Harvard Forest 1996
Forests recovering from agricultural legacies differ in many ways that influence the landscape distribution, local abundance, and dispersion of herbaceous populations, as well as patterns of species associations within the herbaceous stratum. We recorded the presence/absence of 10 herbaceous species on a 1 x 1 m resolution in a 30 x 50 m permanent plot grid in six land use legacy sites (2 plowed, 2 pastured, 2 permanent woodlot) in summer 1996 to test predictions about herbaceous species abundance, richness, dispersion patterns, patterns of association, and their relationships to forest structure, microclimates, and soil resources. The 10 species chosen differed in several ways (evergreen vs. deciduous, stature, clonal architecture, affinity for disturbed vs. undisturbed forests) that allowed us to probe the impacts of prior disturbance and current resource patterns (light, water, nutrients) on the spatial patterns of individual species and species associations.
Mapped Trees in CRUI Land Use Project at Harvard Forest 1996-2006
Numerous variables related to land use disturbance and recovery processes influence forest composition, structure, and growth. We measured forest communities in six sites that were formerly plowed, pastured, or continuously forested woodlots in Prospect Hill to test predictions about species composition, stand structure, and productivity in response to agricultural land use legacies. A permanent 30 x 50 m plot gridded in 5 x 5 m sub-plots was established in each of the 6 sites. All trees at least 2.5 cm DBH (diameter at breast height, 1.3 m) were mapped visually in the field, marked with an aluminum tag, and their DBH recorded in summer 1996. Individual boles of multi-stemmed trees were measured separately and a composite single DBH was calculated. Standing dead trees were also mapped and their DBH recorded as well. The 1996 data were used to determine above ground woody biomass using allometric equations for individual trees. The permanent plots were re-surveyed ten years later in fall 2006. The status of each tree mapped in 1996 was recorded (alive, dead standing, dead fallen, forked) and DBH’s were re-measured. Additional trees that grew across the 2.5 cm DBH threshold during the ten-year period were mapped and their DBH’s measured. Composite diameters and above ground woody biomass were determined for forked trees as in 1996. The 2006 re-measurements were used to analyze changes in species composition, stand structure (density, diameter distribution), and mortality patterns among species and size classes, and to calculate net changes in above ground woody biomass across the ten-year period.
Microclimate in CRUI Land Use Project at Harvard Forest 1997
Understory microenvironmental patterns are strongly influenced by both the forest community and substrate, which are in turn affected by site factors, disturbance history and recovery processes. We measured ground-level microclimates across the growing season as part of a multi-faceted study of soil-plant-atmosphere interactions in sites with different agricultural land-use legacies (formerly plowed, formerly pastured, permanent woodlots) in Prospect Hill. A permanent 30 x 50 m plot was established in each of six sites (2 per land use category) and gridded into 5 x 5 m sub-plots. Fifteen microclimate stations were used to measure photosynthetic photon flux (PPF, umol m-2 s-1, LI-190 quantum sensor, Li-Cor, Inc), soil temperature (107B thermistor, Campbell Scientific, Logan, Utah), and air temperature (107 thermistor, Campbell Scientific, Logan, Utah) at 5 locations each in three sites simultaneously. PPF and air temperature were measured at 50 cm, while soil temperature was measured 5 cm. The central sample station was located in the center (sub-plot D6) of the 30 x 50 m grid and four additional stations were positioned 10 m from the central station in the cardinal directions. In addition to the variables described above, relative humidity (%, 207 air temperature/relative humidity probe, Campbell Scientific, Logan, Utah) was measured at 50 cm at the central station. All sensors were connected to a Campbell Scientific 23X datalogger and sampled continuously every 10 sec and averaged every 10 minutes for 5 days at a time. The stations were switched between two sets of sites (P1-S2-W2 followed by P2-S1-W1) at the end of every week, so the data record for any one site includes alternate weeks. Measurements were made during April through September, 1997. The data archived here are daily means per variable per station. Missing records are due to inclement weather, while blank fields represent occasional sensor or datalogger connection problems.
Photosynthetic Light Response Curves in CRUI Land Use Project at Harvard Forest 1998
Ambient CO2 concentrations in terrestrial ecosystems vary substantially on several spatial and temporal scales as numerous soil, plant, and atmospheric processes respond to irradiance, temperature, moisture and wind. There is one widespread microhabitat in terrestrial ecosystems, the nearground zone, in which CO2 is naturally enhanced above average background levels. CO2 produced by soil respiration diffuses through the litter and boundary layers and dissipates fairly rapidly into the overlying bulk air. However, a marked vertical profile of nearground enriched CO2 (hereafter NEC) is usually present in the first 0-50 cm above ground. The degree of enrichment varies primarily with soil respiration rate and turbulent mixing, secondarily with photosynthesis by plants in the herbaceous stratum, and usually shows marked diel and seasonal variation. References to this CO2 "subsidy" and its effects on plants have occurred occasionally in the literature since 1939, but there have been few detailed studies of either the nearground profile or plant responses in the field, particularly for species that consistently occupy the nearground stratum. Considerable research over the last twenty years in both controlled and field environments has shown that co-occurring plant species may respond differently to artificially elevated CO2. But in contrast to light, temperature, water, and nutrients, plant community ecologists have generally not considered CO2 among the factors that regulate species’ distribution and abundance, except indirectly as it may affect water balance. We have documented differences in forest composition (woody and herbaceous), soil characteristics, microclimates, and nearground CO2 levels among six sites that were formerly plowed, pastured, or continuously forested woodlots in Prospect Hill. We selected three perennial herbaceous species (Aralia nudicaulis, wild sarsaparilla; Clintonia borealis, blue-bead lily; Medeola virginiana, Indian cucumber root) and two do
Herbaceous Stratum Sunfleck Regimes in CRUI Land Use Project at Harvard Forest 1998
Numerous variables related to land use disturbance and recovery processes can influence forest understory irradiance regimes. In addition to season-long measurements of herbaceous stratum microclimates (data archived separately), we explored the degree to which differences in forest community composition and structure generate differences in near-ground sunfleck regimes in our six land use sites (2 plowed, 2 pastured, 2 permanent woodlot). Considerable research has shown that photosynthetic responses to fluctuating irradiance cannot be predicted accurately from steady-state gas-exchange measurements, and that sunflecks may account for both a large fraction of total daily photon fluence and net carbon assimilation by plants in the herbaceous stratum of moist forests. We measured clear-day irradiance patterns to test predictions about how sunfleck frequency, duration, and brightness should vary across the three land-use legacies. We also wished to document sunfleck regimes as part of a companion study on photosynthetic responses by herb and tree species to sunflecks. Twenty-three quantum sensors (Li-190, Li-Cor, Inc., Lincoln, NE) were placed at regularly-spaced interior intersection points across the 30 m x 50 m permanent plot grid in each land use site. The sensors were mounted on stakes 50 cm above ground, leveled, and attached to a Campbell Scientific CR23X datalogger. Photosynthetic photon flux (PPF) values were recorded at all 23 microsites every 6 seconds for 3.5-4.5 hours in the morning (8:00-11:30+ a.m. EST) on one clear day per site in July and August 1998. Using custom software and a sunfleck definition threshold of 100 umol m-2 s-1, sunfleck events were extracted for each microsite across the sampling period and the following were calculated for each fleck event: number of fleck events per hour, sunfleck duration (sec), duration of the shade period prior to the sunfleck (sec), mean PPF across the sunfleck event, and peak PPF during the sunfleck. Descrtipti
Tree Seedlings in CRUI Land Use Project at Harvard Forest 1996
Forests recovering from agricultural legacies differ in many ways that influence tree seed dispersal and seedling establishment patterns. We recorded the number of seedlings (less than 0.5 m tall) of all tree species on a 1 x 1 m resolution across six land use legacy sites (2 plowed, 2 pastured, 2 permanent woodlot) in summer 1996 to test several predictions about seedling abundance, diversity, and dispersion patterns, and their relationships to forest structure, microclimates, and soil resources.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.