Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
10
datasets available to search
ShareScore release 0.9.0
Dataset results
10 results for “Prostate Zones”
ProstateZones - Segmentations of the prostatic zones and urethra for the PROSTATEx dataset
<p>Segmentations of the prostatic zones and urethra for 200 patients from the publicly avaliable PROSTATEx image dataset [1-3]. The dataset is intended for research purposes in the field of medical imaging and to enable training and evaluation of autmatic segmentation methods.</p> <p>The prostatic zones and urethra were manually segmented slice by slice on axial T2w MRIs by two experienced radiologists in collaboration with three junior colleagues. All delineations by junior colleagues has been checked, and if necessary, corrected by one of the more experienced radiologists. The two most experienced radiologists have independently delineated duplicate segmentations for 40 patients, for a total of 240 segmentations. This is intended as a test set where automatic methods can compare their performance with the inter-reader variability of the two radiologists.</p> <p>To ease the use of the dataset, help with structuring the data can be found in the linked GitHub repository.</p> <p> </p> <p>For more information about the dataset, see the dataset publication:</p> <p>Holmlund, W., Simkó, A., Söderkvist, K. <em>et al.</em> ProstateZones – Segmentations of the prostatic zones and urethra for the PROSTATEx dataset. <em>Sci Data</em> <strong>11</strong>, 1097 (2024). https://doi.org/10.1038/s41597-024-03945-2</p> <p> </p> <p> </p> <div> <h4>PROSTATEx</h4> </div> <p>[1] Geert Litjens, Oscar Debats, Jelle Barentsz, Nico Karssemeijer, and Henkjan Huisman. "ProstateX Challenge data", The Cancer Imaging Archive (2017). DOI: 10.7937/K9TCIA.2017.MURS5CL</p> <p>[2] Litjens G, Debats O, Barentsz J, Karssemeijer N, Huisman H. "Computer-aided detection of prostate cancer in MRI", IEEE Transactions on Medical Imaging 2014;33:1083-1092. DOI: 10.1109/TMI.2014.2303821</p> <p>[3] Clark K, Vendt B, Smith K, Freymann J, Kirby J, Koppel P, Moore S, Phillips S, Maffitt D, Pringle M, Tarbox L, Prior F. The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository, Journal of Digital Imaging, Volume 26, Number 6, December, 2013, pp 1045-1057. DOI: 10.1007/s10278-013-9622-7</p>
Prostate MRI T2-weighted images with peripherial and trasition zone segmentations including corresponding PIRADS and PSA values
<p>This dataset contains 114 t2-weighted MRI images of the prostate with corresponding segmentations.The segmentations include two labels, 1 - Transition Zone, 2 - Peripherial Zone. Most of the images include corresponding PIRADS and PSA values, which are available in the file PSA_PIRADS.csv.</p> <p>For more information concerning the images, see the following article.</p> <p>Please cite the following articles, if you are using this dataset:</p> <p>Gibala, S.; Obuchowicz, R.; Lasek, J.; Schneider, Z.; Piorkowski, A.; Pociask, E.; Nurzynska, K. Textural Features of MR Images Correlate with an Increased Risk of Clinically Significant Cancer in Patients with High PSA Levels. <em>J. Clin. Med.</em> <strong>2023</strong>, <em>12</em>, 2836. https://doi.org/10.3390/jcm12082836</p> <p>Gibała, S.; Obuchowicz, R.; Lasek, J.; Piórkowski, A.; Nurzynska, K. Textural Analysis Supports Prostate MR Diagnosis in PIRADS Protocol. <em>Appl. Sci.</em> <strong>2023</strong>, <em>13</em>, 9871. https://doi.org/10.3390/app13179871</p>
Evaluation of the Functional Outcomes After Bilateral, 3D Ultrasound-guided Focal Thermal Ablation of the Prostate Transition Zone, in Patients with Benign Prostatic Hyperplasia-related Obstruction
ClinicalTrials.gov study NCT06212453. IPD Sharing: NO. Countries: 1. Publications: 6.
Prediction Model fo Screening and Diagnosis of Prostate Cancer in PSA Gray Zone Based on Serum PHI Combined With TPV
ClinicalTrials.gov study NCT04251546. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Data from: Comparing radiomic classifiers and classifier ensembles for detection of peripheral zone prostate tumors on T2-weighted MRI: a multi-site study
Open the record for dataset details and reuse information.
Single-cell RNA sequencing of human prostate basal epithelial cells reveals zone-specific cellular populations and gene expression signatures
GEO Series GSE241556. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Assessing Circulating Tumor Cell as a Biomarker for Prostate Cancer Detection in Patients With Gray Zone PSA Level
ClinicalTrials.gov study NCT03488706. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Comparison between Gene expression in stroma and glands of the transitional and peripheral zone of the prostate
GEO Series GSE29090. Homo sapiens. 4 samples. Type: Expression profiling by array.
Single-cell sequencing technology demonstrates cellular and functional heterogeneity within the prostate and between the transitional and peripheral zones
GEO Series GSE166782. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA-sequencing of verumontanum region and peripheral zone of normal human prostate
GEO Series GSE179312. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.