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11 results for “Pseudomonas [fluorescens] SBW25”
Barcoding populations of Pseudomonas fluorescens SBW25
<p>In recent years evolutionary biologists have developed increasing interest in the use of barcoding strategies to study eco-evolutionary dynamics of lineages within evolving populations and communities. Although barcoded populations can deliver unprecedented insight into evolutionary change, barcoding microbes presents specific technical challenges. Here, strategies are described for barcoding populations of the model bacterium Pseudomonas fluorescens SBW25, including the design and cloning of barcoded regions, preparation of libraries for amplicon sequencing, and quantification of resulting barcoded lineages. In so doing, we hope to aid the design and implementation of barcoding methodologies in a broad range of model and non-model organisms. In here we deposit, the raw and processed data we have used during our study.</p>
Data from: Evolutionary dynamics of separate and combined exposure of Pseudomonas fluorescens SBW25 to antibiotics and bacteriophage
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RNAseq data from wild type and evolved Pseudomonas fluorescens SBW25 strains
GEO Series GSE48900. Pseudomonas [fluorescens] SBW25. 4 samples. Type: Expression profiling by high throughput sequencing.
Iron deficiency response of interactions between Brachypodium and Pseudomonas fluorescens SBW25 under controlled growth conditions.
GEO Series GSE158273. Pseudomonas fluorescens; Brachypodium distachyon. 30 samples. Type: Expression profiling by high throughput sequencing.
Differential expression of Pseudomonas fluorescens SBW25 during growth using glucose or MHPP as carbon sources
GEO Series GSE228022. Pseudomonas fluorescens. 8 samples. Type: Expression profiling by high throughput sequencing.
Identifying candidate genes whose expression is regulated by the HutC transcriptional repressor in Pseudomonas fluorescens SBW25
GEO Series GSE146488. Pseudomonas fluorescens. 2 samples. Type: Expression profiling by high throughput sequencing.
Expression analysis of the gacS mutant of Pseudomonas fluorescens SBW25
GEO Series GSE43443. Pseudomonas [fluorescens] SBW25. 8 samples. Type: Expression profiling by array.
Identifying candidate genes whose expression is regulated by CbrAB and NtrBC in Pseudomonas fluorescens SBW25
GEO Series GSE160152. Pseudomonas fluorescens. 2 samples. Type: Expression profiling by high throughput sequencing.
YAMAT-seq of mature tRNA pools in the bacterium Pseudomonas fluorescens SBW25 and derivatives.
GEO Series GSE196705. Pseudomonas fluorescens. 24 samples. Type: Non-coding RNA profiling by high throughput sequencing.
YAMAT-seq of mature tRNA pools in the bacterium Pseudomonas fluorescens SBW25 and derivatives
GEO Series GSE144791. Pseudomonas fluorescens. 27 samples. Type: Other.
Protozoan predation drives rapid adaptive divergence by selecting for tuned cellulose production and amyloid fibrils in Pseudomonas fluorescens SBW25
GEO Series GSE200723. Acanthamoeba sp.; Pseudomonas fluorescens. 24 samples. Type: Expression profiling by high throughput sequencing.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.