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16 results for “Pseudomonas protegens”
Dataset: Single nucleotide switches confer bacteriophage resistance to Pseudomonas protegens
<p>Dataset containing : <br>- csv files : Output file of the SNPs identified in all the phage-resistant variants (C2, C4, C17 and C18).</p> <p>- Excel files : </p> <ul> <li>Raw and pre-analyzed data for the bacterial growth analysis. (<a href="https://zenodo.org/api/records/15696172/draft/files/Bacterial_growth.xlsx/content" target="_blank" rel="noopener noreferrer">Bacterial_growth.xlsx</a>)</li> <li>Raw and pre-analised data for the competition assays (Compatition assays.xlsx). </li> <li>Raw and pre-analised data for the fitness assays in planta (plant experiment.xlsx) </li> <li><span lang="EN-US">Raw data of the phage adsorption assay (phage adsorption assays.xlsx) </span></li> </ul> <p>- Code used for the analysis of all the data.</p> <p>- Image and data pre analysed for the spatial distribution of the bacteria during competition in vitro (drop_competition.rar)</p> <ul> <li>Images of the colonies (GFP and red channel) in bmp format</li> <li>R code used to process and analyse this data (Phage_JV_drop.Rmd)</li> </ul> <p> </p>
Dataset: Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens
<p>This dataset is related to "<em>Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens</em>" and contains all the data obtained from insect experiments and plant-pathogen inhibition assays, as well as the code used for phylogenetic and Biolog anaylsis. </p>
Pseudomonas protegens JUb28
This is one of the Wormbiome database archive files.<br>This entry includes all the genome annotation files related to Pseudomonas protegens JUb28, a\(n\) Gammaproteobacteria.<br>The Wormbiome collection is an online database dedicated to centralizing all the information related to bacteria associated with C. elegans. More information on <a href="https://bitbucket.org/the-samuel-lab/wbm_scripts/src/master/DOCS/Annotations_output.md" target="_blank" rel="noopener noreferrer">the documentation page</a>.<br><br>
Pseudomonas protegens BIGb0404
This is one of the Wormbiome database archive files.<br>This entry includes all the genome annotation files related to Pseudomonas protegens BIGb0404, a\(n\) Gammaproteobacteria.<br>The Wormbiome collection is an online database dedicated to centralizing all the information related to bacteria associated with C. elegans. More information on <a href="https://bitbucket.org/the-samuel-lab/wbm_scripts/src/master/DOCS/Annotations_output.md" target="_blank" rel="noopener noreferrer">the documentation page</a>.<br><br>
Pseudomonas_E protegens BIGb0176
This is one of the Wormbiome database archive files.<br>This entry includes all the genome annotation files related to Pseudomonas_E protegens BIGb0176, a\(n\) Gammaproteobacteria.<br>The Wormbiome collection is an online database dedicated to centralizing all the information related to bacteria associated with C. elegans. More information on <a href="https://bitbucket.org/the-samuel-lab/wbm_scripts/src/master/DOCS/Annotations_output.md" target="_blank" rel="noopener noreferrer">the documentation page</a>.<br><br>
Characterization of DkaiC mutants of Pseudomonas putida KT2440/2 and Pseudomonas protegens CHA0
GEO Series GSE221044. Pseudomonas putida KT2440; Pseudomonas protegens CHA0; Pseudomonas putida. 22 samples. Type: Expression profiling by high throughput sequencing.
Genes expressed by the biological control bacterium Pseudomonas protegens Pf-5 on seed surfaces under the control of the global regulators GacA and RpoS
GEO Series GSE38633. Pseudomonas protegens Pf-5; Pseudomonas protegens. 18 samples. Type: Expression profiling by array.
Phloroglucinol functions as an intercellular chemical messenger with broad transcriptional effects in Pseudomonas protegens
GEO Series GSE69178. Pseudomonas protegens. 15 samples. Type: Expression profiling by high throughput sequencing.
The rpoS transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces
GEO Series GSE38631. Pseudomonas protegens Pf-5; Pseudomonas protegens. 6 samples. Type: Expression profiling by array.
The effect of zinc limitation on transcriptome expression in Pseudomonas protegens Pf-5
GEO Series GSE32921. Pseudomonas fluorescens; Pseudomonas protegens Pf-5. 6 samples. Type: Expression profiling by array.
The GacA transcriptome of Pseudomonas protegens Pf-5 growing on pea seed surfaces
GEO Series GSE38630. Pseudomonas protegens Pf-5; Pseudomonas protegens. 6 samples. Type: Expression profiling by array.
The rpoS transcriptome of Pseudomonas protegens Pf-5 grown in rich medium
GEO Series GSE38632. Pseudomonas protegens; Pseudomonas protegens Pf-5. 6 samples. Type: Expression profiling by array.
Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its hfq mutant (H78Δhfq)
GEO Series GSE141556. Pseudomonas protegens. 6 samples. Type: Expression profiling by high throughput sequencing.
Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its (p)ppGpp0 relA/spoT mutant
GEO Series GSE89004. Pseudomonas protegens. 6 samples. Type: Expression profiling by high throughput sequencing.
Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its crc-deleted mutant (H78Δcrc)
GEO Series GSE141557. Pseudomonas protegens. 6 samples. Type: Expression profiling by high throughput sequencing.
Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its rpoN-deleted mutant (H78ΔrpoN)
GEO Series GSE112907. Pseudomonas protegens. 6 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.