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4 results for “Pyrazines”

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zenodo44/100

Single-crystal X-ray diffractometry data for a sample of [Cu(HF₂)(pyrazine)₂]PF₆ collected on beamline I19-2 at Diamond Light Source

<p>Single-crystal X-ray diffractometry data for a sample of [Cu(HF₂)(pyrazine)₂]PF₆.</p> <p>These data were collected at Diamond Light Source, on&nbsp;beamline I19 (experiments hutch 2), on 2022-01-30, and are particularly useful for testing data reduction routines. They are known to produce good merging statistics and final structure refinement.</p> <p>The sample was prepared as follows:<br> Ammonium hexafluorophosphate (NH₄PF₆) (0.310&nbsp;g, 1.9&nbsp;mmol), ammonium hydrogen difluoride ((NH₄)HF₂) (0.109&nbsp;g, 1.9&nbsp;mmol) and pyrazine (C₄H₄N₂) (0.300&nbsp;g, 3.7&nbsp;mmol) were dissolved in 5&nbsp;mL of deionised water. The obtained colourless solution was slowly added to a blue solution of copper(II) nitrate prepared by dissolving copper(II) nitrate hemipentahydrate (Cu(NO₃)₂&nbsp;&middot;&nbsp;2.5(H₂O)) (0.425&nbsp;g, 1.8&nbsp;mmol) in 5&nbsp;mL of deionised water. The solutions were mixed in a plastic beaker at room temperature. The formation of blue crystals of [Cu(HF₂)(pyrazine)₂]PF₆ on the side of the beaker started after few seconds and continued for about 24&nbsp;hours during which the sealed beaker was not moved.</p> <p>The sample was measured at room temperature and the illuminating beam had a wavelength of 0.4859 &Aring; (25.52 keV).</p> <p>Beamline I19-2 at Diamond Light Source, a four-circle &kappa;-geometry diffractometer (see <a href="https://onlinelibrary.wiley.com/doi/10.1107/97809553602060000936">[Kern 2019]</a>) with an undulator source, is described in <a href="https://doi.org/10.1107/S0909049512008801">[Nowell 2012]</a> but has since been upgraded to use a Dectris Eiger2&nbsp;X&nbsp;4M CdTe hybrid photon counting detector. The data are written in the <a href="https://manual.nexusformat.org/classes/applications/NXmx.html">NXmx variant</a> of the <a href="https://www.nexusformat.org/">NeXus format</a>, and so include metadata with a functionally complete description of the diffractometer.</p> <p>Inventory of data:</p> <ul> <li><strong><code>01_CuHF2pyz2PF6b_Phi.tar.xz</code></strong><br> A single 1750-image 350&deg; &phi; rotation scan from -175&deg; to 175&deg; with 0.2&deg; rotation per image, an exposure time of 0.1&nbsp;s per image, &omega;&nbsp;=&nbsp;-90&deg;, &kappa;&nbsp;=&nbsp;0&deg; and 2&theta;&nbsp;=&nbsp;0&deg;.</li> <li><strong><code>02_CuHF2pyz2PF6b_2T.tar.xz</code></strong><br> A single 1750-image 350&deg; &phi; rotation scan from -175&deg; to 175&deg; with 0.2&deg; rotation per image, an exposure time of 0.1&nbsp;s per image, &omega;&nbsp;=&nbsp;-90&deg;, &kappa;&nbsp;=&nbsp;0&deg; and 2&theta;&nbsp;=&nbsp;20&deg;.</li> <li><strong><code>03_CuHF2pyz2PF6b_P_O.tar.xz</code></strong><br> Two sequential rotation scans: <ul> <li><strong><code>CuHF2pyz2PF6b_P_O_01.nxs</code></strong><br> A 1750-image 350&deg; &phi; scan from -175&deg; to 175&deg; with &omega;&nbsp;=&nbsp;-90&deg;, &kappa;&nbsp;=&nbsp;0&deg; and 2&theta;&nbsp;=&nbsp;0&deg;.</li> <li><strong><code>CuHF2pyz2PF6b_P_O_02.nxs</code></strong><br> A 600-image 120&deg; &omega; scan from -125&deg; to -5&deg; with &phi;&nbsp;=&nbsp;-90&deg;, &kappa;&nbsp;=&nbsp;45&deg; and 2&theta;&nbsp;=&nbsp;0&deg;.</li> </ul> Both scans had 0.2&deg; rotation per image and an exposure time of 0.1&nbsp;s per image.</li> </ul> <p>The same sample was used for all these measurements. Throughout, the sample-to-detector distance was 85&nbsp;mm and the beam was attenuated to 0.2% of its full intensity.</p> <p>For each rotation scan, the data comprise a single top-level NXmx-format NeXus file named <code>&lt;filename&gt;.nxs</code>, one or more image files named <code>&lt;filename&gt;_00000n.h5</code>, where <code>n</code> is a numeral, and a single detector metadata file named <code>&lt;filename&gt;_meta.h5</code>. The NeXus file contains an HDF5 virtual data set that links to the data in the image file(s), and several HDF5 external links to data in the detector metadata file.</p> <p>For internal reference of Diamond Light Source staff, these data were collected as part of commissioning visit CM31144-1. Some file names and corresponding HDF5 link targets have been altered from their original names for consistency with the file contents.</p>

opencc-by-4.0Mar 2022View details →
zenodo36/100

X-ray transient absorption reveals the 1Au (nπ*) state of pyrazine in electronic relaxation, data files

<p>Electronic relaxation in organic chromophores often proceeds via states not directly accessible by photoexcitation. We report on the photoinduced dynamics of pyrazine that involves such states, excited by a 267 nm laser and probed with X-ray transient absorption spectroscopy in a table-top setup. In addition to the previously characterized&nbsp;<sup>1</sup>B<sub>2u</sub>&nbsp;(&pi;&pi;*) (S<sub>2</sub>) and&nbsp;<sup>1</sup>B<sub>3u</sub>&nbsp;(n&pi;*) (S<sub>1</sub>) states, the participation of the optically dark&nbsp;<sup>1</sup>A<sub>u</sub>&nbsp;(n&pi;*) state is assigned by a combination of experimental X-ray core-to-valence spectroscopy, electronic structure calculations,&nbsp;nonadiabatic dynamics simulations, and X-ray spectral computations.&nbsp;</p> <p>The present material contains files produced in the course of data acquisition and the output of the theoretical simulations.</p>

opencc-by-4.0Jul 2021View details →
dryad36/100

Data from: Not just the sum of its parts: Geographic variation and nonadditive effects of pyrazines in the chemical defence of an aposematic moth

Open the record for dataset details and reuse information.

publicSep 2024View details →
zenodo24/100

Datasets and supplemental data for 'Deep Learning-based Design and Screening of Benzimidazole-pyrazine derivatives as Adenosine A2B Receptor Antagonists'

<p><strong>This is the&nbsp;original datasets and supplemental data&nbsp;for &#39;<em>Deep Learning-based Design and Screening of Benzimidazole-pyrazine derivatives as Adenosine A2B Receptor Antagonists</em>&#39;.</strong></p> <ul> <li><strong>Training sets.zip:&nbsp;</strong>The training sets to train the generative model (A2B_lower_100nm) &amp; QSAR model.</li> <li><strong>Trained models.zip:&nbsp;</strong>Trained models of the generative algorithm (A2B_60, ChemBL &amp; DRD2)</li> <li><strong>Generated molecules.zip:&nbsp;</strong>All generated molecules of the given scaffolds.</li> <li><strong>Binding modes A2B.zip:&nbsp;</strong>The binding modes of 5 target molecules to A2BAR.</li> <li><strong>Homology model.pdb:&nbsp;</strong>The homology model of A2BAR.</li> </ul>

opencc-by-4.0Sep 2023View details →

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