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6 results for “Pyricularia oryzae”
Single-nucleotide polymorphisms in isolates Pyricularia oryzae isolates from rice and other hosts
<p>We investigated the presence of inter-lineage hybrids in a set of 886 isolates of the rice-infecting lineage of the rice blast fungus (<em>Pyricularia oryzae</em>).</p> <p>More details in https://doi.org/10.1101/2020.06.02.129296</p> <p>List of files:</p> <p>concatenation_5190SCOs_179isolates.fasta.gz: concatenated sequences of 5190 single copy orthologs from 179 isolates (used in Figures A and B, and computations of polymorphism and divergence in Appendix 1).</p> <p>concatenation_3686SNPs_415isolates.fasta.gz: concatenated polymorphisms identified in 415 isolates at 3686 genomic positions (used in Figure C, Appendix 1).</p> <p>concatenation_503889SNPs_96isolates.fasta.gz: concatenated polymorphisms identified in 96 isolates at 503889 genomic positions (used in Figures D and E, Appendix 1).</p> <p>orthology_table_with_70-15_genemodels.txt: Orthology table, with one orthogroup per line, one species per column, 16445 orthogroups, 179 isolates. The MGG column represents gene models from the 70-15 reference genome MG8, determined subsequently to orthology analysis by blastx of 70-15 sequences against isolate VT0027, which was the closest isolate in a neighbor-net network.</p>
SSR results of 13 markers of 609 Pyricularia oryzae isolates in Vietnam
<p>Dataset represents values of SSR markers, in column, of 609 <em>Pyricularia</em> <em>oryzae</em> isolates, in row. "NA" means the data was missed. Those isolates that are name coded in VNN were collected from North Vietnam; the other, coded VNC, was collected in Central Vietnam. </p>
SSR results of 13 markers of 609 Pyricularia oryzae isolates in Vietnam
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Genome-wide mapping of H3K27 tri-methylation in PRC2 components of Pyricularia oryzae
GEO Series GSE195863. Pyricularia oryzae. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Bayogenin 3-O-Cellobioside is a novel anti-blast metabolite produced in rice in response to Pyricularia oryzae infection
GEO Series GSE126961. Oryza sativa Japonica Group; Oryza sativa Indica Group. 18 samples. Type: Expression profiling by high throughput sequencing.
A novel L-arabinose-responsive regulator found in the rice-blast fungus Pyricularia oryzae (Magnaporthe oryzae)
GEO Series GSE74916. Pyricularia oryzae. 6 samples. Type: Expression profiling by high throughput sequencing.
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OpenNeuro
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