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2 results for “QUAST”
Genome assemblies for "Versatile genome assembly evaluation with QUAST-LG"
<p>Supplementary data for A. Mikheenko, A. Prjibelski, V. Saveliev, D. Antipov, A. Gurevich. Versatile genome assembly evaluation with QUAST-LG. ISMB 2018 PROCEEDINGS (<em>Bioinformatics </em>journal)</p> <p>Reference genomes of</p> <ol> <li><em>Saccharomyces cerevisiae </em>(yeast) version R64-1-1 </li> <li><em>Caenorhabditis elegans </em>(worm) version WBcel235</li> <li><em>Drosophila melanogaster </em>(fruit fly) version BDGP6</li> </ol> <p>And<em> de novo</em> genome assemblies of</p> <ol> <li>Yeast_PB (<em>S. cerevisiae</em>, genome size: 12.1 Mb): Canu, FALCON, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and PacBio SMRT)</li> <li>Yeast_NP (<em>S. cerevisiae</em>, genome size: 12.1 Mb): Canu, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and Oxford Nanopore)</li> <li>Worm_PB (<em>C. elegans</em>, genome size: 100.3 Mb): Canu, FALCON, Flye, MaSuRCA, Miniasm (from Illumina pair-ends and PacBio SMRT)</li> <li>Fly_MP (<em>D. melanogaster</em>, genome size: 137.6 Mb): ABySS2, MaSuRCA, Meraculous, Platanus, SOAPdenovo2, SPAdes (from Illumina pair-ends and mate-pairs)</li> <li>Human_MP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and mate-pairs)</li> <li>Human_NP (<em>H. sapiens</em>, genome size: 3.1 Gb): UpperBound assembly only (from Illumina pair-ends and Oxford Nanopore)</li> </ol> <p>Each pack (items 1-4) is accompanied with the upper bound assembly created with QUAST-LG (for computing theoretical limits on assembly correctness and completeness for a particular genome and set of reads). For more information, interactive QUAST-LG reports, and links to <em>de novo</em> assemblies of the human datasets please visit http://cab.spbu.ru/software/quast-lg/ or write to <em>quast.support@cab.spbu.ru.</em></p>
Quast outputs for "When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes"
<p>Quast outputs for "When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes"</p>
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