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13 results for “RAxML”
Fig. 6. RAxML tree for 18S in Two New Species of Centrohelid Heliozoans: Acanthocystis costata sp. nov. and Choanocystis symna sp. nov.
Fig. 6. RAxML tree for 18S rRNA genes of 8 pterocystid heliozoans (1320 nucleotide positions). Only bootstrap values more than 50% are shown. New sequence is in bold.
Fig. 5. RAxML tree for 18S in Two New Species of Centrohelid Heliozoans: Acanthocystis costata sp. nov. and Choanocystis symna sp. nov.
Fig. 5. RAxML tree for 18S rRNA genes of 16 heliozoans from the genus Acanthocystis and Polyplacocystis ambigua as an outgroup (1520 nucleotide positions). Only bootstrap values more than 50% are shown. New sequence is in bold. Crossed branches were shortened fourfold.
L-ins-i alignment and RAxML inference of Anthracoidea umbrosae sp. nov.
<p>The files contain the L-ins-i alignment of LSU sequences and the RAxML phylogeny of species in the genus Anthracoidea. Based on these a new species (A. umbrosae) of these plant parasitic fungi is proposed</p>
FIGURE 9. Phylogram obtained with RAxML and the combined mitochondrial sequence data. Bootstrap values above nodes. See Table 1 in Stictonectes rebeccae sp. n. from the Iberian Peninsula, with notes on its phylogenetic position (Coleoptera, Dytiscidae)
FIGURE 9. Phylogram obtained with RAxML and the combined mitochondrial sequence data. Bootstrap values above nodes. See Table 1 for localities.
FIGURE. Phylogenetic tree based on RAxML analyses of a combined LSU, ITS and SSU dataset. Bootstrap support values for ML and MP equal to or greater than 75% and PP value greater than 0.95 are in thickened. Ex-type isolates are in bold, and new taxa are indicated in red. The tree is rooted with Atractospora aquatica (S-1297) and A. aquatica (MFLU 18–2322). in Conlarium sichuanense sp. nov., on Ficus virens from Sichuan Province, China
FIGURE. Phylogenetic tree based on RAxML analyses of a combined LSU, ITS and SSU dataset. Bootstrap support values for ML and MP equal to or greater than 75% and PP value greater than 0.95 are in thickened. Ex-type isolates are in bold, and new taxa are indicated in red. The tree is rooted with Atractospora aquatica (S-1297) and A. aquatica (MFLU 18–2322).
FIGURE 1. The best scoring RAxML tree obtained using a in A new species Pseudoplagiostoma dipterocarpicola (Pseudoplagiostomataceae, Diaporthales) found in northern Thailand on members of the Dipterocarpaceae
FIGURE 1. The best scoring RAxML tree obtained using a combined dataset of ITS, LSU, tef1-α and tub2 sequences. The tree is rooted to Togninia minima (AE F56), Togninia novae-zealandiae (CBS 110156) and Phaeoacremonium hungaricum (CBS 123036). ML and MP bootstrap values equal to or greater than 70% and BYPP equal to or greater than 0.95 are given at the nodes (ML/MP/BYPP). Ex-type strains are in black bold and the newly generated sequences are in red bold.
FIGURE 1. The best-scoring RAxML tree constructed from a concatenated ITS, tef1 in Combination of morphological and molecular data support Pestalotiopsis eleutherococci (Sporocadaceae) as a new species
FIGURE 1. The best-scoring RAxML tree constructed from a concatenated ITS, tef1-α, and tub2 dataset of Pestalotiopsis species. The tree is rooted with Truncatella laurocerasi (ICMP 11214) and T. angustata (CBS 144025). The asterisk at P. jesteri indicates its ambiguous status on Index Fungorum (2022). The type delivered sequences are indicated in bold and marked with T. The new isolates are in blue. The asterisk at P. intermedia indicates a misidentification.
FIGURE 1. RAxML tree resulting from analyzed partial ACT dataset. The scale bar indicates 0.05 in Sexual morph of Phaeoacremonium aureum from Rhizophora mucronata collected in southern Thailand
FIGURE 1. RAxML tree resulting from analyzed partial ACT dataset. The scale bar indicates 0.05 changes. ML, MP bootstrap support values> 65 % from 1,000 replicates and PP> 0.95 from 1 million generations in Markov chains are shown at the nodes. Newly generated sequences are in bold text. The tree was rooted to Pleurostoma richardsiae (CBS 270.33) (Pleurostomataceae).
FIGURE 1. The maximum likelihood majority rule consensus tree for the analyzed Pseudorobillarda and related taxa. RAxML bootstrap support values above 50 in Morphology and phylogeny of Pseudorobillarda eucalypti sp. nov., from Thailand
FIGURE 1. The maximum likelihood majority rule consensus tree for the analyzed Pseudorobillarda and related taxa. RAxML bootstrap support values above 50% (ML) are given at the nodes. Phylogeny tree is rooted to Schismatomma decolorans.
FIGURE 1. The best scoring RAxML tree from 42 in Camarosporium sensu stricto in Pleosporinae, Pleosporales with two new species
FIGURE 1. The best scoring RAxML tree from 42 strains based on combined dataset of LSU, SSU and ITS sequences. Bootstrap support values for maximum-likelihood (ML) and maximum-parsimony (MP) values greater than 50% are given above the nodes. Posterior Probability values (PP) greater than 0.7 are given below the nodes. The culture collection numbers are given after the species names. The tree is rooted to Montagnula anthostomoides (CBS 615.86) All type and ex-type strains are in bold and newly generated sequences are in red.
FIGURE. RAxML tree based on a combined dataset of partial LSU and ITS sequence analyses. Bootstrap support values for ML equal to or greater than 60 %, Bayesian posterior probabilities (BYPP) equal to or greater than 0.95 are shown as ML/ BYPP above the nodes. New isolates are in red bold. The tree is rooted to Conioscypha lignicola and Conioschypha minutispora (FMR11245) and Conioscyphascus varius. The scale bar represents the expected number of nucleotide substitutions per site. in Yunnan-Guizhou Plateau: a mycological hotspot
FIGURE. RAxML tree based on a combined dataset of partial LSU and ITS sequence analyses. Bootstrap support values for ML equal to or greater than 60 %, Bayesian posterior probabilities (BYPP) equal to or greater than 0.95 are shown as ML/ BYPP above the nodes. New isolates are in red bold. The tree is rooted to Conioscypha lignicola and Conioschypha minutispora (FMR11245) and Conioscyphascus varius. The scale bar represents the expected number of nucleotide substitutions per site.
indicate branches. above MrBayes numbers by inferred The . supports Ixodes of probability subgenera 22 posterior the of Inference 16 from Bayesian ticks of indicate genomes mitochondrial branches below 40 numbers of The sequences. RAxML nucleotide by the inferred from support inferred bootstrap Phylogenies Likelihood . 2 FIGURE Maximum in A new subgenus, Australixodes n. subgen. (Acari: Ixodidae), for the kiwi tick, Ixodes anatis Chilton, 1904, and validation of the subgenus Coxixodes Schulze, 1941 with a phylogeny of 16 of the 22 subgenera of Ixodes Latreille, 1795 from entire mitochondrial genome sequences
indicate branches. above MrBayes numbers by inferred The . supports Ixodes of probability subgenera 22 posterior the of Inference 16 from Bayesian ticks of indicate genomes mitochondrial branches below 40 numbers of The sequences. RAxML nucleotide by the inferred from support inferred bootstrap Phylogenies Likelihood . 2 FIGURE Maximum
Figure 4. Optimal maximum-likelihood tree resulting from the RAxML analysis. Bootstrap support values greater than 50 in Taxonomy of Micronesian monitors (Reptilia: Squamata: Varanus): endemic status of new species argues for caution in pursuing eradication plans
Figure 4. Optimal maximum-likelihood tree resulting from the RAxML analysis. Bootstrap support values greater than 50% are shown on the nodes. Scale bar corresponds to the mean number of nucleotide substitutions per site.
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