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5 results for “REDCap”
CLIP-Embedded RedCaps Text-Image Dataset
<p>This dataset was created by applying the <a href="https://github.com/openai/CLIP">CLIP embedding</a> to the<a href="https://redcaps.xyz"> RedCaps </a>dataset. Queries are generated by OpenAI's GPT model simulating textual queries searching multimodal content, embedded via CLIP. The data was curated by Desai, Kaul, Aysola, and Johnson from data collected by Reddit, and further curated into vector data by Engels for <a href="https://arxiv.org/pdf/2402.00943">this work</a>. </p> <p>Usage of the dataset itself is subject to <a href="https://www.reddit.com/wiki/api-terms">Reddit terms</a>, <a href="https://www.redditinc.com/policies">Reddit User Agreeement, Content Policy, and Privacy Policy</a> (quoted from Desai et. al.'s <a href="https://arxiv.org/pdf/2111.11431">accompanying paper</a> for the image-and-text dataset). Usage of the <strong>queries </strong>are subject to <a href="https://openai.com/policies/row-terms-of-use/">OpenAI terms</a>. Among others, OpenAI terms prohibits using the query component of this dataset to develop models that compete against OpenAI.</p>
SpyCATS REDCap Data Dictionary
<p>The complete data dictionary for all CRFs used in the SpyCATS longitudinal study in The Gambia.</p>
LASHA data dictionary for redcap
<p>RedCap Data dictionary for LASHA record</p>
Generalizable EHR-R-REDCap pipeline for a national multi-institutional rare tumor patient registry
<p><strong>Objective</strong>: To develop a clinical informatics pipeline designed to capture large-scale structured EHR data for a national patient registry.</p> <p><strong>Materials and Methods</strong>: The EHR-R-REDCap pipeline is implemented using R-statistical software to remap and import structured EHR data into the REDCap-based multi-institutional Merkel Cell Carcinoma (MCC) Patient Registry using an adaptable data dictionary.</p> <p><strong>Results</strong>: Clinical laboratory data were extracted from EPIC Clarity across several participating institutions. Labs were transformed, remapped and imported into the MCC registry using the EHR labs abstraction (eLAB) pipeline. Forty-nine clinical tests encompassing 482,450 results were imported into the registry for 1,109 enrolled MCC patients. Data-quality assessment revealed highly accurate, valid labs. Univariate modeling was performed for labs at baseline on overall survival (N=176) using this clinical informatics pipeline.</p> <p><strong>Conclusion</strong>: We demonstrate feasibility of the facile eLAB workflow. EHR data is successfully transformed, and bulk-loaded/imported into a REDCap-based national registry to execute real-world data analysis and interoperability.</p>
Generalizable EHR-R-REDCap pipeline for a national multi-institutional rare tumor patient registry
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.