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314
datasets available to search
ShareScore release 0.9.0
Dataset results
314 results for “RNA signature”
Data files: Single-cell RNA profiling of Plasmodium vivax-infected hepatocytes reveals parasite- and host- specific transcriptomic signatures and therapeutic targets
<p>Scripts, preprocessed count matrices, and single-cell data objects generated in <strong>“Single-cell RNA profiling of <em>Plasmodium vivax</em><em>-</em>infected hepatocytes reveals parasite- and host- specific transcriptomic signatures and therapeutic targets” </strong></p>
Data files: Single-cell RNA sequencing of Plasmodium vivax sporozoites reveals stage- and species-specific transcriptomic signatures
<p>Scripts, preprocessed count matrices, single-cell data objects, and generated data (tables and .rds files) from the scRNA-seq analyses performed in <strong>“Single-cell RNA sequencing of Plasmodium vivax sporozoites reveals stage- and species-specific transcriptomic signatures".</strong></p> <p> </p>
patteRNA: transcriptome-wide search for functional RNA elements via structural data signatures, Datasets.
<p>Datasets, code and results supporting the manuscript:</p> <p>Ledda M. & Aviran S., patteRNA: transcriptome-wide search for functional RNA elements via structural data signatures</p>
Cross-disease integration of single-cell RNA sequencing data from lung myeloid cells reveals TAM signature in in vitro model
<p>Single cells from a 3D human cell-based model comprising tumor cell line-derived spheroids, cancer-associated fibroblasts and primary monocytes were dissociated and analyzed using scRNAseq. 4 monocyte donors were used in the 3D model, and 3 monocyte donors were used for 2D differentiation of macrophages.</p>
Automated recognition of RNA structure motifs by their SHAPE data signatures
<p>Datasets, code and results supporting the manuscript:</p> <p>Radecki P., Ledda M. & Aviran S., Automated recognition of RNA structure motifs by their SHAPE data signatures</p>
TCGA RNA-Seq normalized rsem data, TCGA clinical data and mutational signature profiles
<p>Normalized rsem RNA-Seq data for each of the 33 TCGA tumor types named as "<em>tumortype</em>rnaSeq.tar", a file containing TCGA clinical data ("cliDat_tcga_18.tar") and a text file with single base substitution mutational signatures for each sample from COSMIC (https://cancer.sanger.ac.uk/cosmic, “signatureProfileSample.txt.zip”).</p>
Single-cell and spatial RNA sequencing identify divergent microenvironments and progression signatures in early- versus late-onset prostate cancer
Open the record for dataset details and reuse information.
Micro RNA Genetic Signature in NSCLC Egyptian Patients
ClinicalTrials.gov study NCT02445924. IPD Sharing: Not stated. Countries: 1. Publications: 3.
Implication of Long Non-coding RNA CCDC144NL-AS1/Micro RNA-143-3p Axis Expression Level as Novel Signature in Colorectal Cancer
ClinicalTrials.gov study NCT06427278. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Single Nuclei RNA Sequencing of the Gastrocnemius Muscle Reveals Unique Transcriptomic Signatures of Peripheral Artery Disease
GEO Series GSE233882. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Depletion-assisted multiplexing cell-free RNA sequencing reveals distinct human and microbial signatures in plasma versus extracellular vesicle
GEO Series GSE216561. Homo sapiens. 113 samples. Type: Expression profiling by high throughput sequencing.
RNA signatures of DMD urinary stem cells identify antisense effect and causative mutations in undiagnosed patients
GEO Series GSE162108. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Systems biology analysis reveals distinct molecular signatures promoting immune responsiveness to the BNT162b COVID-19 vaccine [bulk RNA-seq]
GEO Series GSE246525. Homo sapiens. 38 samples. Type: Expression profiling by high throughput sequencing.
Perturbation-informed signatures from crosswise integration of transcriptome and chromatin accessibility analyses predict susceptibility to candidate anticancer drugs [RNA-Seq]
GEO Series GSE179057. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
A human TH17 population with a tissue-resident signature in healthy and inflamed oral mucosal tissues [Bulk RNA-seq]
GEO Series GSE116139. Homo sapiens. 28 samples. Type: Expression profiling by high throughput sequencing.
MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication [NC350 RNA]
GEO Series GSE254488. Zea mays. 30 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
A Molecular Signature Defining Exercise Adaptation and In Vivo Reprogramming in Skeletal Muscle [RNA-seq]
GEO Series GSE222329. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing.
Two distinct extracellular RNA signatures released by a single cell type identified by microarray and next-generation sequencing [miRNA]
GEO Series GSE88754. Homo sapiens. 9 samples. Type: Non-coding RNA profiling by array.
Re-expression of SMARCA4/BRG1 in Small Cell Carcinoma of Ovary, Hypercalcemic Type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism [RNA-seq]
GEO Series GSE151025. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
RNA-Seq identifies condition-specific biological signatures of ischemia-reperfusion injury in the human kidney
GEO Series GSE142077. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.