Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
23
datasets available to search
ShareScore release 0.9.0
Dataset results
23 results for “RNA structure probing”
Molecular dynamics simulations with grand-canonical reweighting suggest cooperativity effects in RNA structure probing experiments
<p>Molecular dynamics simulations of an RNA GAAA tetraloop interacting with SHAPE reagent 1-Methyl-7-nitroisatoic anhydride (1m7) in different numer of copies (1 to 19). See also https://arxiv.org/abs/2209.12640 and https://github.com/bussilab/paper-shapemd.</p>
Investigating the interplay between RNA structural dynamics and RNA chemical probing experiments
<p>Normalized SHAPE reactivity for pre-miR20b and CDE2GG as reported in 'Investigating the interplay between RNA structural dynamics and RNA chemical probing experiments'.</p>
FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.
GEO Series GSE24622. Mus musculus. 10 samples. Type: Other.
DMS-MaPseq: A genome-wide or targeted approach for RNA structure probing in vivo
GEO Series GSE84537. Saccharomyces cerevisiae; Homo sapiens; Drosophila melanogaster. 29 samples. Type: Expression profiling by high throughput sequencing.
smartSHAPE: a low-input method for transcriptome-wide RNA structure probing uncovers RNA structure landscape in mouse colonic macrophages
GEO Series GSE155961. Homo sapiens; Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing; Other.
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
GEO Series GSE45803. Homo sapiens; Saccharomyces cerevisiae. 25 samples. Type: Other.
Carbodiimide reagents for the chemical probing of RNA structure in cells
GEO Series GSE118309. Homo sapiens; Mus musculus. 42 samples. Type: Other.
Probing in vivo RNA structure with optimized DMS-MaPseq in rice
GEO Series GSE197245. Oryza sativa; Arabidopsis thaliana; Oryza sativa Japonica Group. 17 samples. Type: Other; Expression profiling by high throughput sequencing.
Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis
GEO Series GSE148936. Bacillus subtilis. 14 samples. Type: Expression profiling by high throughput sequencing; Other.
A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS
GEO Series GSE254895. Escherichia coli. 33 samples. Type: Other.
Transcriptome-Wide Combinatorial RNA Structure Probing in Living Cells with icSHAPE and icLASER
GEO Series GSE132099. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing; Other.
In vivo structure probing of RNA in Archaea: Novel insights into the ribosome structure of Methanosarcina acetivorans
GEO Series GSE229536. Methanosarcina acetivorans C2A. 12 samples. Type: Other.
A small cationic probe highly selective for RNA tertiary structure
GEO Series GSE286293. Escherichia coli; Geobacillus stearothermophilus; Oceanobacillus iheyensis; Orthoflavivirus denguei. 41 samples. Type: Other.
Transcriptome-wide RNA structure probing reveals the structural basis of Dicer binding and cleavage
GEO Series GSE146952. Homo sapiens. 34 samples. Type: Other.
RNA structure probing to characterize RNA-protein interations on a low abundance pre-mRNA in living cells
GEO Series GSE159719. Mus musculus. 13 samples. Type: Other.
robust statistical modeling improves sensitivity of high-throughput rnA structure probing experiments
GEO Series GSE78208. Saccharomyces cerevisiae. 4 samples. Type: Other.
Template switching enables chemical probing of native RNA structures
GEO Series GSE274121. Listeria monocytogenes. 18 samples. Type: Other.
Probing Xist RNA structure in cells using Targeted Structure-Seq
GEO Series GSE67667. Mus musculus. 13 samples. Type: Other.
High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast.
GEO Series GSE83821. Saccharomyces cerevisiae. 22 samples. Type: Other.
In vivo probing of nascent RNA structures reveals principles of cotranscriptional folding
GEO Series GSE95567. Escherichia coli. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.