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ShareScore release 0.9.0
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15 results for “RTE”
Clear-sky Outgoing Longwave Radiation Fluxes from Offline RTE-RRTMGP for AMIP Simulation of CMIP6 Models
<p>This study utilizes RTE-RRTMGP (<a href="https://doi.org/10.1029/2019MS001621">https://doi.org/10.1029/2019MS001621</a>) to compute clear-sky, aerosol-free outgoing longwave radiation (OLR) fluxes for AMIP simulation of CMIP6 models, using 36-year average of monthly-mean temperature and humidity profiles at 19 pressure level as an input. This dataset is used to investigate the cause of inter-model spread in OLR when the same set of radiative transfer schemes is used.</p>
Population analysis of retrotransposons in giraffe genomes supports RTE decline and widespread LINE1 activity in Giraffidae
<p>The majority of structural variation in genomes is caused by insertions of transposable elements (TEs). In mammalian genomes, the main TE fraction is made up of autonomous and non-autonomous non-LTR retrotransposons commonly known as LINEs and SINEs (Long and Short Interspersed Nuclear Elements). Here we present one of the first population-level analysis of TE insertions in a non-model organism, the giraffe. Giraffes are ruminant artiodactyls, one of the few mammalian groups with genomes that are colonized by putatively active LINEs of two different clades of non-LTR retrotransposons, namely the LINE1 and RTE/BovB LINEs as well as their associated SINEs. We analyzed TE insertions of both types, and their associated SINEs in three giraffe genome assemblies, as well as across a population level sampling of 48 individuals covering all extant giraffe species. Results The comparative genome screen identified 139,525 recent LINE1 and RTE insertions in the sampled giraffe population. The analysis revealed a drastically reduced RTE activity in giraffes, whereas LINE1 is still actively propagating in the genomes of extant (sub)-species. In concert with the extremely low activity of the giraffe RTE, we also found that RTE-dependent SINEs, namely Bov-tA and Bov-A2, have been virtually immobile in the last 2 million years. Despite the high current activity of the giraffe LINE1, we did not find evidence for the presence of currently active LINE1-dependent SINEs. TE insertion heterozygosity rates differ among the different (sub)-species, likely due to divergent population histories. Conclusions The horizontally transferred RTE/BovB and its derived SINEs appear to be close to inactivation and subsequent extinction in the genomes of extant giraffe species. This is the first time that the decline of a TE family has been meticulously analyzed from a population genetics perspective. Our study shows how detailed information about past and present TE activity can be obtained by analyzing large-scale population-level genomic data sets.</p>
Population analysis of retrotransposons in giraffe genomes supports RTE decline and widespread LINE1 activity in Giraffidae
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Using RTE method to invert the surface temperature of Xi'an in four seasons
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Interest of HI-RTE Elasticity in Obstetric
ClinicalTrials.gov study NCT01032564. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Gene expression analysis of murine renal tubular epithelial cells upon SETD2 knockout [RNAseq_RTE]
GEO Series GSE146541. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
EBUS-TBNA-RTE VS Radiography in Staging of NSCLC
ClinicalTrials.gov study NCT03392506. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Realtime-Elastography (RTE) and Thyroid Nodules
ClinicalTrials.gov study NCT01609946. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Accuracy of RTE for Evaluating Hepatic Fibrosis in Chronic Hepatitis: a Prospective Multicenter Study
ClinicalTrials.gov study NCT02143180. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Retrotransposons in Werner syndrome-derived macrophages trigger type I interferon-dependent inflammation in an atherosclerosis model [RTE RNA-seq]
GEO Series GSE247721. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing.
ATAC-seq of Notch signaling response in RTE cells
GEO Series GSE229283. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptome profiling of Listeria monocytogenes during growth on a RTE-meat matrix
GEO Series GSE20274. Listeria monocytogenes. 12 samples. Type: Expression profiling by array.
Chromatin landscape analysis of murine renal tubular epithelial cells upon SETD2 knockout [ATACseq_RTE]
GEO Series GSE146538. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA-seq of Notch signaling response in RTE cells
GEO Series GSE229284. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
ATAC-seq and RNA-seq of Notch signaling response in RTE cells
GEO Series GSE229285. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.