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6 results for “Rafetus”
Fig. 2 in A phylogeny of softshell turtles (Testudines: Trionychidae) with reference to the taxonomic status of the critically endangered, giant softshell turtle, Rafetus swinhoei
Fig. 2 Cladogram generated from maximum parsimony (MP), maximum likelihood (ML), and Bayesian analyses of combined mitochondrial and nuclear genes with branch length estimated by the Bayesian analyses. Numbers above branches are MP and ML bootstrap values, respectively. Numbers below branches are Bayesian single-model and mixed-model
Fig. 4 in A phylogeny of softshell turtles (Testudines: Trionychidae) with reference to the taxonomic status of the critically endangered, giant softshell turtle, Rafetus swinhoei
Fig. 4 Biogeographic optimizations based on the trionychid phylogeny using the program RASP (Reconstruct Ancestral State in Phylogenies). a Results from the Bayesian binary method (BBM). b Results from
Fig. 3 Parsimony network obtained from TCS v1.21 in A phylogeny of softshell turtles (Testudines: Trionychidae) with reference to the taxonomic status of the critically endangered, giant softshell turtle, Rafetus swinhoei
Fig. 3 Parsimony network obtained from TCS v1.21 for Cytb and ND4 data of Rafetus swinhoei samples, based on a 95 % connection limit. Gaps were treated as fifth state. Symbol size corresponds to haplotype frequency. Each node represents one mutational step. Haplotype frequency: A1= 3, A2=2, B1=2 and all other haplotypes n =1. A1 Hoan Kiem, Yen Bai, Phu Tho. A2 China. A3 Thanh Hoa (LTB). B1 Dong Mo, Ba Vi. B2 Ba Vi (LTB). B3 Hoan Kiem (LTB)
Fig. 1 in A phylogeny of softshell turtles (Testudines: Trionychidae) with reference to the taxonomic status of the critically endangered, giant softshell turtle, Rafetus swinhoei
Fig. 1 River systems where Rafetus swinhoei has been recorded. Locations of the type specimen and Vietnam's samples used in this study are shown in yellow and red, respectively
The genome data and annotation data of Rafetus swinhoei
<p>The death of the only known female soft-shelled turtle (<em>Rafetus swinhoei</em>) in 2019 marked the imminent danger of the species' permanent global extinction. To avoid it and facilitate the protection of <em>R. swinhoei</em>, we sequenced and assembled its chromosome-level genome and characterized its sex determination system. Population history analysis indicates <em>R. swinhoei</em> has the lowest heterozygosity among all turtles examined, and its population size has declined dramatically over the past ten million years. Many genes involved in autophagy and DNA damage response were shown to be under positive selection and fast evolution, suggesting their important contributions to the long lifespan and evolutionary adaptation of <em>R. swinhoei</em>. The loss of several tooth-related genes in turtle genomes explains the genetic basis of their toothless phenotype. These results provide genetic insights into the evolution of <em>R. swinhoei</em>, and will be useful for the potential identification of additional female individuals in the field.</p>
The genome data and annotation data of Rafetus swinhoei
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