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5 results for “Reproducible Science”
Reproducible and Attributable Materials Science Workflows
<p>This set includes the deidentified data, reproducible analysis and research report of the project on Reproducible and Attributable Materials Science Workflows.</p>
Reproducibility in science: calculated kinetic isotope effects for cyclopropyl carbonyl radical.
<p>Calculated kinetic isotope effects, without tunnelling corrections, for the ring opening of cyclopropylcarbinyl radical using a variety of different Hamiltonians and basis sets.</p>
Making plasma science more open, collaborative, and reproducible
<p>The reproducibility crisis of modern science is the inability of scientists to reproduce roughly half of the results published in scientific journals. This crisis has affected a broad range of fields, such as psychology, chemistry, and oncology. While physicists tend to have high confidence that physics research is reproducible, no comprehensive studies have been performed to support or refute this claim. Nevertheless, the scientific, cultural, and institutional practices that contribute to the reproducibility crisis in other fields are also present in plasma science. This tutorial will describe how to implement best practices for scientific reproducibility into plasma research. The talk will begin by outlining sources of irreproducibility, such as cognitive biases, improper use of statistics, publication bias, closed access policies for data and software, and the reward system for modern academia. The talk will then describe remedies for these problems such as open access data policies; open metadata standards; open source software; training on proper use of statistics; pre-registration of research methodologies; independent methodological and statistical support; and valuing the reproducibility of research in tenure, hiring, and funding decisions.</p>
Data to reproduce the results presented in Lake et al. 2023. Science of The Total Environment, https://doi.org/10.1016/j.scitotenv.2023.162332 ("Use of a submersible spectrophotometer probe to fingerprint spatial suspended sediment sources at catchment scale")
<p>This repository contains the absorbance data measured on the water samples collected in all sampling sites, for the three campaigns, as described in Lake et al., 2023. </p> <p>Data consists of:</p> <p>- Absorbance data compensated for measured concentration and compensated for absorbance measured on filtered water </p> <p>- Absorbance data compensated for measured concentration</p> <p>Shown files are the input files for the MixSIAR modelling exercise as described in Lake et al., 2023.</p>
Dataset to reproduce the figures and table in "An Outsized Role for the Labrador Sea in the Multidecadal Variability of the Atlantic Overturning Circulation" in Science Advances
Climate models are essential tools for investigating intrinsic North Atlantic variability related to variations in the Atlantic meridional overturning circulation (AMOC), but recent observations have called into question the fidelity of models that emphasize the importance of Labrador Sea processes. A multi-century pre-industrial climate simulation that resolves ocean mesoscale eddies has a realistic representation of key observed subpolar Atlantic phenomena, including the dominance of density-space overturning in the eastern subpolar gyre, and thus provides uniquely credible context for interpreting short observational records. Despite weak mean surface diapycnal transformation in the Labrador Sea, multidecadal AMOC variability can be traced to anomalous production of dense Labrador Sea Water with local buoyancy forcing in the interior Labrador Sea playing a significant driving role. The files included here are the post-processed model output fields and associated codes needed to reproduce the figures and table in Yeager et al., 2021, An Outsized Role for the Labrador Sea in the Multidecadal Variability of the Atlantic Overturning Circulation, doi:10.31223/X5ZP68.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.