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6
datasets available to search
ShareScore release 0.9.0
Dataset results
6 results for “Rescoring”
Code and data sets for "MS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates"
<p>Code used to prepare data sets, train and evaluate new MS²PIP models, evaluate MS²Rescore for immunopeptidomics, and generate figures. See README.md for more information on how to use these files and reproduce the results reported in the manuscript titled "MS²Rescore: Data-driven rescoring dramatically boosts immunopeptide identification rates".</p>
Data for "MS²Rescore 3.0 is a modular, flexible, and user-friendly platform to boost peptide identifications, as showcased with MS Amanda 3.0"
<p>This data set contains reanalyzed data from the "MS2 500 ms" and "MS2 750 ms" workflow <a href="https://doi.org/10.1016/j.mcpro.2022.100219">originally published by Furtwängler et al. 2022</a>. </p><p>The full data set is available on ProteomeXchange via the PRIDE partner repository using ID <a href="https://www.ebi.ac.uk/pride/archive/projects/PXD029320">PXD029320</a>. <br> </p><p>This data set contains, for both workflows </p><ul><li>mzML files</li><li>Output files from analysis with MS Amanda + settings file</li><li>Output files from analysis with MS Amanda in combination with Percolator + settings file</li><li>Percolator pin files</li><li>Output files from analysis with MS²Rescore</li></ul>
TIMS²Rescore: A DDA-PASEF optimized data-driven rescoring pipeline based on MS²Rescore
<p>Code and datasets for the "TIMS²Rescore: A DDA-PASEF optimized data-driven rescoring pipeline based on MS²Rescore" manuscript (https://doi.org/10.1101/2024.05.29.596400) </p>
Datasets for Oktoberfest: Open-source spectral library generation and rescoring pipeline based on Prosit
<p>This sdataset contains two zip files, one for the HLA and one for metaproteomics data. These contain the results from individual oktoberfest runs for the publication including the required msms.txt files and percolator outputs.</p>
MS²Rescore report example
Open the record for dataset details and reuse information.
Deep Learning Predictions Enable Peptide-Spectrum Match Rescoring In FragPipe
<p>FASTA, pepxml, and pin files</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.