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68 results for “Research publishing”
Open Research Skills Workshops - Open access publishing Workshop
<p><strong>This is the first workshop on Open Access Publishing in a series of workshops about Open Research Skills.</strong></p><p>This workshop covers:</p><p>Introduction to open access publishing</p><ul><li>Types of open access publishing</li><li>Examples of open access publishing journals and platforms</li><li>Benefits of open access publishing</li><li>Types of outputs that can be published</li></ul><p>Demonstration </p><ul><li>Demonstrating open publishing </li><li>Showing how a reproducible article is published and all the different outputs that are linked to it and how to do this</li></ul><p>Exercise</p><ul><li>Discuss and explore open publishing giving examples of different articles that show how open publishing works. We will pick those that show data and code deposited in repositories and also that use of protocol.io for publishing open methods</li></ul><p><strong>List of training workshops in Open Research Skills:</strong></p><ul><li><strong>24th February 2023 - Open access publishing</strong></li><li>24th March 2023 - Using repositories</li><li>21st April 2023 - GitHub basics</li><li>28th April 2023 - GitHub collaborative workflows</li><li>26th May 2023 - Standard vocabularies and ontologies</li><li>30th June 2023 - FAIR data</li></ul><p><strong>Project overview:</strong></p><p>Our project aims to upskill participants in open research skills to increase the quality and reusability of phytolith research and related disciplines such as archaeology, palaeosciences and plant sciences. We will run six hands-on training workshops on open access publishing and research outputs, using repositories, ontologies and standard vocabularies, implementation of FAIR Guidelines for phytolith research, and two workshops on Github basic and advanced skills. The materials from all workshops will be archived as self-study courses on our website (<a href="https://open-phytoliths.netlify.app/">https://open-phytoliths.netlify.app/</a>). We will also provide translation during workshops and training materials into multiple languages.</p>
Publishing Reproducible Research Outputs - Interviewees and interview questions
<p>The table '<strong>Interview questions</strong>' shows the focus of our investigation and stakeholder engagement activities. It should be noted that not all interview questions were asked to all stakeholder groups based on appropriateness and time available. Some questions in the table may appear to be repeated: this is because slightly different phrasing was used based on the stakeholder interviewed.</p> <p>Legend:</p> <ul> <li>Research Funding Organisations: RFO</li> <li>Research Performing Organisations: RPO</li> <li>Infrastructure Providers: IP </li> <li>Academic Publishers: AP</li> <li>Researchers and research groups: RRG</li> </ul> <p>The table '<strong>List of interviewees</strong>' includes all stakeholders engaged in the context of this research.</p>
Publishing Reproducible Research Outputs - Thematic coding of interview findings
<p>The spreadsheet in the present dataset (CSV format) includes the anonymised thematic coding that has been applied to our interview findings. A list of interviewees and interview questions is available <a href="https://doi.org/10.5281/zenodo.5141665">here</a>.</p> <p>The thematic coding has been applied by using <a href="https://www.qsrinternational.com/nvivo-qualitative-data-analysis-software/home">NVivo</a>, a professional qualitative analysis software, and then exported in spreadsheet form for public sharing. The findings of this analysis have been used to inform our final report, which is available in our <a href="https://zenodo.org/communities/ke-prro/?page=1&size=20">Zenodo project Community</a>.</p>
Monitoring open access publishing of NWO funded research (2015-2021) data set
<p>This is the dataset underlying the report "Monitoring open access publishing of NWO funded research" (<a href="https://doi.org/10.5281/zenodo.7041897">https://doi.org/10.5281/zenodo.7041897</a>)</p> <p>The report presents statistics on the extent to which publications from the period 2015–2021 funded by NWO are available in Open Access. The analyses presented in this report also cover publications funded by the Netherlands Organisation for Health Research and Development ZonMw. This report builds on two earlier reports, published in <a href="https://zenodo.org/record/4446042">2020</a> and <a href="https://zenodo.org/record/5056043">2021</a>, covering publications from the period 2015–2018 and 2015-2020, respectively.</p>
A mapping of keywords from published papers on alien squirrels to biological invasion research themes
<p><strong>Context</strong></p> <p>This dataset was used to produce the worldl and the graphs in the editorial to the research topic <a href="https://www.frontiersin.org/research-topics/29270/ecology-impact-and-management-of-squirrel-invasions"><em>Ecology, impact and management of squirrel invasions</em></a> (La Morgia et al. 2023).</p> <p><strong>Contents of the dataset</strong></p> <p>The dataset contains the keywords of papers since 2000 harvested with a Web of Science search (performed on 29/05/2023) using the advanced search string TS=(invasive squirrel) OR TI=(invasive squirrel) OR AB=(invasive squirrel). We screened the search results, excluding papers irrelevant to alien squirrels, for example, papers on computer science or physiology, medical or other aspects without any bearing to conservation science. To do this, we checked the abstract and keywords of the papers. Out of the 401 initial papers, after this first screening, we kept 217 in this dataset. The keywords of these papers were manually assigned to alien squirrel research topics by the authors of this dataset (using an own categorisation) and then mapped to the seven broad themes of invasive alien species research of <a href="https://doi.org/10.1007/s10530-023-03067-7">Stevenson et al. (2023)</a>: </p> <ol> <li>Ecosystems: topics which discuss a specific region, or biome, or focused on a particular species strongly associated with one ecosystem type;</li> <li>Monitoring: topics regarding all aspects of monitoring, including detection, identification, and distributional mapping;</li> <li>Management and decision-making: topics discussing the management and socio-political aspects of invasion science, such as prevention, control, and policy;</li> <li>Interactions: topics discussing the interactions with native species, or the effects of those interactions</li> <li>Assessing change: topics focused on studying and analysing temporal and ecological change;</li> <li>Traits: topics that explored the characteristics of alien squirrels;</li> <li>Invasion mechanisms: topics discussing dispersal pathways and drivers of spread.</li> </ol> <p><strong>Dataset description</strong></p> <p>Every row (N = 1275) in the comma-separated .csv represents one original keyword with reference to the paper in which that keyword appears and mapped to the research topics on invasive squirrels and the broad themes in invasion biology research. The .csv contains the following fields:</p> <ul> <li>ID: a unique ID assigned to the combination of an original keyword and the corresponding paper harvested from the WoS search</li> <li>original_keyword: the original keywords associated with the paper (WoS search)</li> <li>keyword_topic: categorization of original keywords into topics related to invasive squirrel research by La Morgia et al. (2023)</li> <li>mapped_category: mapping to one of the seven broad themes of invasive alien species research of <a href="https://doi.org/10.1007/s10530-023-03067-7">Stevenson et al. (2023)</a> as listed and described above</li> <li>authors: author(s) of the paper (WoS search)</li> <li>year: publication year of paper (WoS search)</li> <li>title: title of the paper (WoS search)</li> <li>journal: full journal name (WoS search)</li> <li>doi: full doi of the paper (WoS search)</li> </ul> <p><strong>Potential applications of the dataset</strong></p> <p>This dataset can be used to reproduce the graphs in La Morgia et al. (2023) or to perform more in-depth review or analysis of the literature on alien squirrel invasions. For more information and graph code, we refer to <a href="https://github.com/Vale-LaMo/squirrels">this GitHub repository</a>.</p>
RDA Publishing Workflows_ Research Workflows (Responses)
<p>Responses to online questionnaire / call for examples from Research Data Alliance Working Group on Publishing Research Data Workflows.</p> <p>These relate to the article 'Connecting data publication to the research workflow: a preliminary analysis' by the same authors, submitted to the International Digital Curation Conference, 2017</p>
Model outputs of Wei et al. (2022): "Salt intrusion as a function of estuary length in periodically weakly stratified estuaries", published in Geophysical research Letters.
<p>The .mat file includes all model data used in the study "Salt intrusion as a function of estuary length in periodically weakly stratified estuaries", published in Geophyscial Research Letters, 2022. The .txt file contains description of all physical variables contained in the .mat file.</p>
Research Scholars Workshop: Publishing in Beyond
<p><span>Not sure where to submit your research to? Consider publishing your research through <em>Beyond: Undergraduate Research Journal (</em></span><a href="https://commons.erau.edu/beyond/" target="_blank" rel="noopener">https://commons.erau.edu/beyond/</a><span>). This is a peer-reviewed publication of the Embry-Riddle Aeronautical University Office of Undergraduate Research. The journal publishes the following scholarly works by ERAU students from the Worldside, Daytona, and Prescott campuses:</span></p>
"Towards Responsible Publishing" - Online researcher survey dataset
<p><a href="https://www.research-consulting.com/" target="_blank" rel="noopener">Research Consulting</a> and the <a href="https://www.cwts.nl/" target="_blank" rel="noopener">Centre for Science and Technology Studies (CWTS)</a> were commissioned to determine to what extent the vision, mission and objectives set out in the TRP proposal serve the needs of the global research community. Through a consultative approach, we sought to assess whether there is appetite for the type of change proposed by cOAlition S in the TRP proposal. In addition, we aimed to understand how the ‘Towards Responsible Publishing’ proposal may be modified or refined to ensure it resonates with the research community and sees broad adoption; identify any showstoppers or unintended consequences and propose proactive measures to mitigate them, ensuring successful implementation; and ascertain whether the existing scholaly communication infrastructure can support this proposal and if not, identify where research funders can strengthen the infrastructure. </p> <p>As part of the consultation, the Centre for Science and Technology Studies and Research Consulting developed a researcher survey to gather researcher feedback on aspects of the scholarly communication system. This deposit provides our anonymised survey data. Please note that country information is available for all countries with at least 50 responses; in all other cases, the country has been replaced with “Other”.</p>
Nearly six decades of grazing research published by the Grassland Society of Southern Africa: Trends, recommendations, and gaps
<p>The dataset contains data about articles pulled from a search in Scopus and Google Scholar from the African Journal of Range and Forage Science between 1966 and 2023 using the search terms "grazing" AND"management"; "communal" AND "grazing". The associated R code contains code for natural language processing. </p> <p>The dataset is supplementary to the published journal article: <span>10.2989/10220119.2024.2397952</span></p>
Monitoring open access publishing of NWO funded research (data)
<p>This is the dataset underlying the report "Monitoring open access publishing of NWO funded research" (https://doi.org/10.5281/zenodo.5055609). </p> <p>The report presents statistics on the extent to which publications from the period 2015–2020 funded by NWO are available in Open Access . The analyses presented in this report also cover publications funded by the Netherlands Organisation for Health Research and Development ZonMw.</p> <p>This report builds on an <a href="https://doi.org/10.5281/zenodo.4446042">earlier report</a> published in 2020 covering publications from the period 2015–2018.</p> <p> </p>
Data for the research article "High-Temperature Deformation of Enstatite-Olivine Aggregates" published in JGR Solid Earth
<p>The data available in this repository is the original data presented in the research article: Bystricky, M., Lawlis, J., Mackwell, S., & Heidelbach, F. (2024). High-temperature deformation of enstatite-olivine aggregates, Journal of Geophysical Research: Solid Earth, 129, e2023JB027699. https://doi.org/10.1029/2023JB027699.</p> <p>Version v1: data at time of original submission (2023)</p> <p>Version v2: data at time of publication (2024)</p>
The results of thermodynamic calculations for alloys presented in a paper published in Journal of Materials Research and Technology, 2023, 27, pp. 6182–6191
<p>Thermophysical data for the alloys developed within the project. The results have been published in ournal of Materials Research and Technology, 2023, 27, pp. 6182–6191.</p>
"Towards Responsible Publishing" - Online researcher survey questionnaire
<p><a href="https://www.research-consulting.com/" target="_blank" rel="noopener">Research Consulting</a> and the <a href="https://www.cwts.nl/" target="_blank" rel="noopener">Centre for Science and Technology Studies (CWTS)</a> were commissioned to determine to what extent the vision, mission and objectives set out in the TRP proposal serve the needs of the global research community. Through a consultative approach, we sought to assess whether there is appetite for the type of change proposed by cOAlition S in the TRP proposal. In addition, we aimed to understand how the ‘Towards Responsible Publishing’ proposal may be modified or refined to ensure it resonates with the research community and sees broad adoption; identify any showstoppers or unintended consequences and propose proactive measures to mitigate them, ensuring successful implementation; and ascertain whether the existing scholaly communication infrastructure can support this proposal and if not, identify where research funders can strengthen the infrastructure.</p> <p>As part of the consultation, the Centre for Science and Technology Studies and Research Consulting developed a researcher survey to gather researcher feedback on aspects of the scholarly communication system. This deposit provides our online survey questionnaire.</p>
Digital publishing of Indic manuscripts and inscriptions using the READ Workbench corpus development, research and publishing framework
<p>Paper presented on Friday 11 June 2021 at the Digital Medievalist Global Symposium <em>The past, present, and future of Digital Medieval Studies</em> for the Asia & Oceania Panel, in the session Reading Indic and Japanese scripts.</p> <p> </p>
Data sources for the manuscript on groundwater stress indicators published in Water Resources Research
<p>We computed seven global-scale groundwater stress indicators at the 0.5° grid-cell level and for transboundary aquifers> 20,000 km². All indicators were calculated for current conditions (1981-2010 or 2001-2010) based on a homogenized version of the concatenated WATCH Forcing Data ERA-40 (WFD) and WFD ERA-Interim data sets (WFDEI). In addition, four of the indicators were computed for the 2050s (2041-2070) under the worst-case greenhouse gas emissions scenario RCP8.5 applying ten climate and irrigation scenarios. The scenarios were derived by combining two irrigation scenarios (“AAI constant” and “AAI LandSHIFT”) with model output from the five global climate models GFDL-ESM2M, HadGEM2 -ES, IPSL-CM5A-LR, MIROC-ESM-CHEM, and NorESM1-M.</p> <p>Here, we provide the WaterGAP model output used to compute the groundwater stress indicators. A description of the indicators and the underlying data can be found in the reference below. Moreover, a table with coordinates and grid-cell area [km²] used in WaterGAP is provided for the conversion of units.</p> <p>The model output comprises:</p> <p>1. Monthly groundwater recharge (GWR and GWRswb) 1981-2010 and 2041-2070 [mm/month, km³/month]</p> <p>2. Monthly groundwater withdrawals (WWg) 1981-2010 (constWU, transWU) and 2041-2070 (constWU) [m³/month]</p> <p>3. Monthly net abstractions from groundwater (NAg) 1981-2010 (constWU, transWU) and 2041-2070 (constWU) [m³/month]</p> <p>4. Monthly groundwater discharge (“gwrunoff”) 2001-2010 from a model run with human water use (transWU) [mm/month]</p> <p>5. Monthly groundwater discharge (“gwrunoff”) 2001-2010 from a model run without human water use (NAT) [mm/month]</p> <p>6. Monthly groundwater storage 2001-2010 from a model run with human water use (transWU) [mm]</p> <p>7. Monthly groundwater storage 2001-2010 from a model run without human water use (NAT) [mm]</p>
Data from: Thermal springs and active fault network of the central Colca River basin, Western Cordillera, Peru, published in Journal of Volcanology and Geothermal Research
<p>We used hydrogeochemical analysis of 35 water samples from springs and geysers, together with isotopic (δ<sup>18</sup>O and δD) analysis, chemical and mineral studies of precipitates collected in the field around these outflows, and field observations to study the thermal system of the Colca River basin in S Peru. We aimed to determine the geochemistry of thermal waters, identify fluid sources and their origin, estimate reservoir temperature, and discuss the regional tectonic and volcanic framework. Our findings presented in Tyc et al. (2022; https://doi.org/10.1016/j.jvolgeores.2022.107513) corroborate a heterogeneous and complex geothermal system in the central region of the Colca River basin. This system exhibits contrasting hydrogeochemical and physical characteristics, variable isotope compositions, distinct reservoir temperatures, and associated precipitates near thermal springs. The control of water chemistry in this area is closely linked to the activity of the Ampato-Sabancaya magmatic chamber and the presence of tectonic structures, which enable intricate interactions between meteoric waters, magmatic fluids, and gases.</p> <p>Here, we present datasets used in the article (Tyc et al., 2022; https://doi.org/10.1016/j.jvolgeores.2022.107513), including:</p> <p>- Physicochemical characteristics of water samples collected by authors in the field in September 2012 and August–September 2017 (Table 1)</p> <p>- Chemical and isotopic composition of water samples collected by authors in the field in September 2012 and August–September 2017 (Table 2) and those monitored by INGEMMET in years 2013-2018 (Table 3)</p> <p>- Chosen molecular ratios discussed in Tyc et al., 2022 (Table 4)</p> <p>- Calculated reservoir temperature with the use of different Na/K geothermometers (Table 5)</p> <p>- Mineral phases in efflorescences precipitating at the water sampling sites (Table 6).</p> <p>Thirty-five sets of water samples were collected in the field in September 2012 and August–September 2017 using polyethylene bottles of high density (Table 1). Consequently, these were analyzed in the Water Analysis Laboratory at the University of Silesia in Katowice (Poland; Table 2). Water temperatures, pH, and electrical conductivity were measured in the field using portable pH meter CP-315 and conductivity meter CC-315, both with temperature sensors, with an accuracy of ±0.1 °C, ±0.01 pH, and ± 0.1% (up to 19.999 mS/cm) or ± 0.25% (above 20.00 mS/cm), respectively. Discharge of springs was estimated if possible (Table 1). Both cations and anions were analyzed by ion chromatography using Methron 850 Professional Ion Chromatograph with separate Metrosept C4–150 and A-supp 7–250 columns for cations and anions, respectively (Tables 2 and 4). Analysis of water analyses collected by INGEMMET in years 2013-2018 was performed at the INGEMMET Chemical Laboratory in Lima with the use of ion chromatography (Dionex ICS 5000) for the determination of anions and inductively coupled plasma optical emission spectrometry (ICP-OES) – VARIAN for cations (Table 3). Isotopic analyses (δ<sup>2</sup>H, δ<sup>18</sup>O) of 17 water samples collected in 2017 were performed at the Stable Isotope Laboratory Institute of Geological Sciences Polish Academy of Sciences (Table 2). The δ<sup>2</sup>H values of studied H<sub>2</sub>O were measured using the H-Device peripheral coupled to MAT 253 IRMS (Thermo Scientific) in a dual inlet system. For the determination of δ<sup>18</sup>O in H<sub>2</sub>O, an equilibration technique was used. The analysis used the GasBench II peripheral device (Thermo Scientific) coupled to MAT 253 IRMS with a continuous He flow. The AquaChem 4.0.284 software was used to evaluate the water samples' geochemical properties and calculate reservoir temperature for thermal waters (Table 5). Precipitates found at the water sampling sites were collected separately into plastic bags with strings and sealed boxes. These samples were subsequently analyzed at the Institute of Earth Sciences, University of Silesia in Katowice. The qualitative chemical composition and mineral characteristics were examined using a Philips XL 30 ESEM/TMP scanning electron microscope coupled with an energy-dispersive spectrometer (EDS; EDAX type Sapphire). The phase composition of the precipitates was determined through X-ray diffraction (XRD) using a Philips PW 3710 diffractometer. The XRD data were analyzed and interpreted using the X'Pert HIGHScore Plus software (Table 6).</p>
Data from: Reporting guidelines for community-based participatory research (CBPR) did not improve the reporting quality of published studies: a systematic review of studies on smoking cessation
<p>Although a guideline for reporting the results of community-based participatory research (CBPR) was published in 2010, the impact on the quality of reporting a CBPR on smoking cessation is unknown. Here we provide the raw data of a systematic review that assessed the impact of a 2010 community-based participatory research reporting guideline. on the quality of reporting a CBPR on smoking cessation. Specifically, we searched the MEDLINE, Embase, the Cochrane Central Register for Controlled Trials (CENTRAL), PsycINFO, and CINAHL databases and included articles published up to October 2018 (PROSPERO: CRD42019111668). We assessed reporting quality using a 13-item checklist.</p>
Overview of Research Data Sharing Policies Across Various Scientific Publishers
<p><strong>Context </strong></p><p>With the aim of advancing trust in published research, (scientific) publishers are developing Research Data Sharing Policies for their portfolio. Some publishers have the same policy across all journals. For example for the publishers Frontiers and Springer-Nature, a Data Availability statement is mandatory for all journals in their portfolio. While other publishers have different policy levels depending on the journal (e.g. Elsevier, American Chemical Society). In this list, one will find a short overview of Research Data Sharing Policies across publishers (mostly relevant to the Faculty of Science at Utrecht University).</p><p><strong>Limitations</strong></p><p>The list of publishers does not encompass all scientific publishers. Some Research Data Sharing Policies might be subjected to change.</p>
Supplementary data for: "Global growth, green goals: Shaping sustainable futures in international business education and research" published at BAR - Brazilian Administration Review
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