Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
6
datasets available to search
ShareScore release 0.9.0
Dataset results
6 results for “Rhynchonellida”
The last representatives of the Superfamily Wellerelloidea (Brachiopoda, Rhynchonellida) in the westernmost Tethys (Iberian paleomargins) prior to their demise in the Early Toarcian Mass Extinction Event
<p><span>The last clade-level extinction episode affecting the Phylum Brachiopoda has been long-established in the Early Toarcian Mass Extinction Event (ETMEE) around the Pliensbachian-Toarcian transition, when several rhynchonellide groups became extinct and others underwent a notable renewal in the western Tethys. Among them, Wellerelloidea is a long-range superfamily severely affected by this environmental crisis, embodying the subfamily Cirpinae as the last wellerelloids worldwide, prior to their global extinction in the Pb-To transition. The profuse record of Lower Jurassic cirpines in the peri-Iberian paleomargins provides an opportunity to clarify the taxonomy of wellerelloid species in the pre-extinction interval. A new species (<em>Cirpa lucentina</em>) is erected and the revision of the Cirpinae taxa around the ETMEE is carried out. Morphometric analysis and the study of internal structures of the shells support the splitting between the genera <em>Cirpa</em> and <em>Salgirella</em>, adding new supplementary diagnostic criteria. The biogeographic distribution of this clade in the western Tethys and its evolutionary history in the Early Jurassic reveal </span><span>a <em>pervasive</em> colonization pattern of both epicontinental and epioceanic habitats. T</span><span>he Mediterranean origin of the last representatives of this group is ascertained, but while diversification of <em>Salgirella</em> took place in epioceanic habitats, speciation of <em>Cirpa</em> is unrelated to biochorema boundaries, even colonizing epicontinental seas until their extinction prior to the hyperwarming event that occurred in the basal Serpentinum Zone. A rhynchonellide morphogroup epitomized by cirpines was resilient to this event in the epicontinental seas. This morphogroup is also recorded after the extinction interval by means of the genus <em>Pseudogibbirhynchia</em>, thus postulating potential pre- and post-extinction phyletic relationships.</span></p>
Data from: Combined analysis of extant Rhynchonellida (Brachiopoda) using morphological and molecular data
Independent molecular and morphological phylogenetic analyses have often produced discordant results for certain groups which, for fossil-rich groups, raises the possibility that morphological data might mislead in those groups for which we depend upon morphology the most. Rhynchonellide brachiopods, with more than 500 extinct genera but only 19 extant genera represented today, provide an opportunity to explore the factors that produce contentious phylogenetic signal across datasets, as previous phylogenetic hypotheses generated from molecular sequence data bear little agreement with those constructed using morphological characters. Using a revised matrix of 66 morphological characters, and published ribosomal DNA sequences, we performed a series of combined phylogenetic analyses to identify conflicting phylogenetic signals. We completed a series of parsimony-based and Bayesian analyses, varying the data used, the taxa included, and the models used in the Bayesian analyses. We also performed simulation-based sensitivity analyses to assess whether the small size of the morphological data partition relative to the molecular data influenced the results of the combined analyses. In order to compare and contrast a large number of phylogenetic analyses and their resulting summary trees, we developed a measure for the incongruence between two topologies, and simultaneously ignore any differences in phylogenetic resolution. Phylogenetic hypotheses generated using only morphological characters differed amongst each other, and with previous analyses, while molecular-only and combined Bayesian analyses produced extremely similar topologies. Characters historically associated with traditional classification in the Rhynchonellida have very low consistency indices on the topology preferred by the combined Bayesian analyses. Overall, this casts doubt on the use of morphological systematics to resolve relationships among the crown rhynchonellide brachiopods. However, expanding our dataset to a larger number of extinct taxa with intermediate morphologies is necessary to exclude the possibility that the morphology of extant taxa is not dominated by convergence along long branches.
Data from: Combined analysis of extant Rhynchonellida (Brachiopoda) using morphological and molecular data
Open the record for dataset details and reuse information.
The last representatives of the Superfamily Wellerelloidea (Brachiopoda, Rhynchonellida) in the westernmost Tethys (Iberian paleomargins) prior to their demise in the Early Toarcian Mass Extinction Event
Open the record for dataset details and reuse information.
Data from: Molecular phylogeny of rhynchonellide articulate brachiopods (Brachiopoda, Rhynchonellida)
We present here the first report based on phylogenetic analyses of small subunit (SSU/18S) and large subunit (LSU/28S) ribosomal DNA (rDNA) sequences from a wider-than-token sample of rhynchonellide articulate brachiopods, with data from 11 of ∼20 extant genera (12 species) belonging to all four extant superfamilies. Data exploration by network and saturation analyses shows that the molecular sequence data are free from major aberrations and are suitable for phylogenetic reconstruction despite the presence of large deletions in four SSU rDNA sequences. Although molecular sequence analyses cannot directly illuminate the systematics of fossils, the independent, genealogical evidence and phylogenetic inferences about extant forms that they make possible are highly relevant to paleontological systematics because they highlight the limitations of evolutionary inference from morphology. Parsimony, distance, maximum likelihood (no clock) and Bayesian (relaxed-clock) analyses all find a tree topology that disagrees strongly with the existing superfamily classification. All tested phylogenetic reconstructions agree that the taxa analyzed fall into three clades designated A1, A2, and B that reflect two major divergence events. The relaxed-clock analysis indicates that clades A and B diverged in the Paleozoic, while clades A1 and A2 reflect Permo-Triassic (and later) events. Morphological homoplasy and possible gene co-option are suggested as the main sources for the discord between the morpho-classification, the results of cladistic analyses of morphology, and the relationships reconstructed from molecular sequences. The origin, function and evolutionary implications of the deletion-bearing rhynchonellide SSU rDNA sequences are briefly discussed in relation to pseudogenes and concerted evolution in the rDNA genomic region.
Data from: Molecular phylogeny of rhynchonellide articulate brachiopods (Brachiopoda, Rhynchonellida)
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.