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14 results for “Rickettsiales”
Genbank annotation and sequence of the genome of a Rickettsiales symbiont of Reticulomyxa filosa
<p>The genome sequence of a Rickettsiales symbiont was selectively from the genome sequencing reads of its host, Reticulomyxa filosa. Those sequences were obtained from a previous third-party study (doi: 10.1016/j.cub.2013.11.027). The selective assembly procedure was based on GC content and coverage of contigs obtained from the total read sets with SPAdes. Full details are provided in the manuscript file.<br>The obtained symbiont sequence was then annotated with Prokka, and the gbk output file selected.</p><p>This genome was obtained and analysed in the context of a larger genome comparative studies on the Rickettsiales, aimed to investigate the evolutionary patterns within the whole lineage.</p>
Figure 1 in Aegyptianella pullorum (Rickettsiales: Anaplasmataceae) in tick Argas persicus (Acari: Argasidae) from Iran: a preliminary assessment
Figure 1. Phylogenetic tree generated based on 16SrRNA sequence data of the Aegyptianella pullorum species generated in this study and similar sequences from GenBank database constructed using Bayesian Inference method. Main clade of tree is separated by a rectangular shape. The taxa of the present study are bold and defined with a name and GenBank accession number. Posterior probability values are inserted at nodes. Branch lengths are proportional to the evolutionary changes. Tree is re-rooted by Rickettsia slovaca as out-group.
Figure 9 in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 9. Phylogenetic tree of Rickettsiales bacterium Ac37b, Rickettsia bellii, Rickettsia raoultii, Anaplasma and Coxiella in ticks based on neighbor-joining (NJ) modeling; only values higher than 60 were added to the tree branches. (a) Phylogenetic tree of Rickettsiales bacterium Ac37b identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (1320 bp) and triangles (1430 bp). (b) Phylogenetic tree of Rickettsia bellii identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (1109 bp). (c) Phylogenetic tree of Rickettsia raoultii identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (855 bp). (d) Phylogenetic tree of Anaplasma identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (1455 bp) and triangles (547 bp). (e) Phylogenetic tree of Coxiella identified in Inner Mongolia; the 16S rRNA gene sequences obtained in this study are marked with black squares (1463 bp).
Figure 6 in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 6. PCoA of β-diversity measures for twelve groups. Weighted UniFrac PCoA graph showing PC1, which accounts for 47.46% of variation, and PC2, which accounts for 28.93% of variation. Different colored dots represent different regions and species.
Figure 5 in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 5. (a) Clustering tree analysis by linear discriminant analysis effect size (LEfSe). (b) Histogram of LDA analysis.
Figure 4 in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 4. Alpha diversity measures for Dermacentor nuttalli and Ixodes persulcatus in four areas. (a) Shannon's index. (b) Simpson's index.
Figure 7 in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 7. Venn diagram for cluster analysis of OTUs between Dermacentor nuttalli and Ixodes persulcatus (genus level).
Figure 3 in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 3. Microbe composition of different regions and species. (a) Top 10 microbial components at the genus level. (b) Top 12 microbial components at the species level.
Figure 2. Shannon–Wiener curve. X in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 2. Shannon–Wiener curve. X-axis: amount of sequencing data; Y-axis: corresponding Shannon diversity index.
Figure 1. Prostaglandin E 2 in The role of a novel Wolbachia (Rickettsiales: Anaplasmataceae) synthetic peptide, WolFar, in regulating prostaglandin levels in the hemolymph of Acheta domesticus (Orthoptera: Gryllidae)
Figure 1. Prostaglandin E 2 activity of Acheta domesticus at different postinjection times relative to the concentrations of WolFar applied. Each point represents the mean ± SE.
Figure 2 in The role of a novel Wolbachia (Rickettsiales: Anaplasmataceae) synthetic peptide, WolFar, in regulating prostaglandin levels in the hemolymph of Acheta domesticus (Orthoptera: Gryllidae)
Figure 2. Formation of nodules in the internal system and fat body of Acheta domesticus following injections of 100% concentration of WolFar. The red triangles indicate the positions of the nodules. A: Negative control; B: at 24 h; C: at 48 h; D: at 72 h.
Fig. 1 in Polymerase chain reaction and gyrA nucleotide sequence analysis of Wolbachia endosymbionts (Rickettsiales: Anaplasmataceae) in various species of Culicidae, Cimex lectularius (Hemiptera: Cimicidae) and Dirofilaria immitis (Rhabditida: Onchocercidae)
Fig. 1. Phylogenetic tree based on Maximum Likelihood depicting the grouping of Wolbachia from various hosts based on analysis of the gyrA gene. The numerical value displayed on branches is the bootstrap value (1,000 replicates), and branches with values below 50% are collapsed. The tree illustrates that gyrA sequences distinguish Wolbachia subtypes based on host taxonomy, demonstrating that this gene may contribute to Wolbachia strain typing projects and future phylogenetic analysis.
Figure 8 in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 8. The composition of bacteria and pathogenic bacteria with a high abundance.
Figure 1 in Microbial diversity of ticks and a novel typhus group Rickettsia species (Rickettsiales bacterium Ac37b) in Inner Mongolia, China
Figure 1. Map of tick collection sites in Inner Mongolia, China.
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