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224 results for “SQUID”
EPR and SQUID interrogations of Cr(III) trimer complexes in the MIL-101(Cr) and bimetallic MIL-100(Al/Cr) MOFs
<p><strong>Description of the dataset: </strong></p> <ul> <li><strong>Data type</strong>: Experimental spectroscopic measurements, computer simulation and analysis</li> <li>Files are with filename extensions: <strong>DSC</strong>, <strong>DAT</strong>, <strong>m</strong>, <strong>txt</strong></li> <li>Information on <strong>origin of the data</strong>:</li> </ul> <ul> <li>EPR spectroscopic measurements with filename extensions <strong>DSC</strong>, <strong>DTA.</strong></li> <li>EPR spectroscopic simulation and analyses with filename extension <strong>m</strong>.</li> <li>EPR spectra are exported as <strong>txt</strong> files in ASCII format.</li> </ul> <ul> <li>X-band CW-EPR spectroscopic measurements were generated by EMX spectrometer equipped with SHQ cavity produced by Bruker.</li> <li><strong>If the dataset includes multiple files that relate to each other:</strong> <ul> <li>Files in <strong>PARACAT_WP4_08082023_01_MIL_CW </strong>folder includes X-, Q- and W-band CW-EPR spectroscopic measurements; original data are in DTA/DSC and txt formats.</li> <li>Files in <strong>PARACAT_WP4_08082023_02_MIL_SQUID </strong>folder include SQUID magnetometry data; original data are in DAT file</li> <li>File <strong>PARACAT_WP4_08082023_02_MIL_Origin </strong>include origin plotted data</li> </ul> </li> </ul> <p> </p> <ul> <li><strong>Information on</strong>: <ul> <li>@10K – measured at 10 K</li> <li>definitions of variables: <strong>Magnetic field, Temperature.</strong></li> <li>units of measurement: <strong>Gauss (G), K, degree (°), milliTesla (mT)</strong>.</li> </ul> </li> </ul> <p> </p>
Consumption rates of tethered live and dead pinfish and dried squid in mudflat and seagrass habitats in the Upper Laguna Madre in 2018.
These data were recorded during surveys of a tethering experiment conducted on June 7, 2018, during which 180 tethered prey were deployed in two habitat types (seagrass and mudflat) in the Upper Laguna Madre, Texas, USA (27.544006, -97.285912). In each habitat, the following prey types were deployed: squidpops (1 cm2 discs of dried squid (Duffy et al. 2015) attached to 5 cm tethers, n=50), live (n=20) and dead (n=20) pinfish (Lagodon rhomboides, 4 cm fork length, attached to 20 cm tethers) at midday in each habitat. The presence/absence of tethered prey on each stake was observed and recorded after 1 hour and 24 hours. The rate of decay (i.e., disappearance or consumption rate of tethered prey over time) was calculated as the slope of an exponential model fit to discrete observations of the presence/absence of tethered prey over time. Additional environmental variables (temperature, salinity) were also recorded at the site.
Beak Shape in Birds and Squid: Principal Components Analysis of 2D Landmarks
<p>R code to analyze observations of beak traces from specimens of birds and squid.</p> <p>Notes are in the code. Watch for updates.</p> <p>Where the csv files include data published by different authors, the doi references to the original publications are included in the R code. I took care to correctly download/process/transcribe where applicable, but please do notify me if there are errors.</p>
Coordinates tracing 2D outlines of beaks (birds and squid)
<p>Two-dimensional coordinates for lines traced onto images of beaks.</p> <ul> <li>This is a .zip archive xy coordinates (250 files, .txt); and a list of specimen names (1 file, .csv).</li> <li>All images traced in FIJI.</li> <li>For each specimen, there is a trace of the beak rostrum and a separate trace of the beak bite surface.</li> <li>Each trace file should be a list of xy coordinates that ends at the beak tip. This must be checked/verified/corrected for all files before running any analyses! I recommend visual inspection by plotting each beak dataset as a scatterplot in a color spectrum (rainbow, etc.).</li> <li>These were traced over pixel images, so each file has a different number of xy coordinates (depending on the pixel resolution/image size that was traced).</li> <li>All bird specimen images were downloaded from Phenome10k.org</li> <li>All cephalopod specimens were traced from images published in: <ul> <li>Xavier, J. C. & Cherel, Y. 2009 Cephalopod beak guide for the Southern Ocean. British Antarctic Survey.</li> </ul> </li> </ul>
SQUID manuscript workflow with outputs
<p>This repository reproduces the analysis performed in for our method <strong>SQUID</strong> (<strong>S</strong>urrogate <strong>Qu</strong>antitative <strong>I</strong>nterpretability for <strong>D</strong>eepnets; Seitz, McCandlish, Kinney and Koo). It contains tools to apply SQUID on several previously-published genomic models, and compare its results to existing attribution methods.</p><p>The scripts contained in this release are a replica of those found in the current release of our GitHub repository (https://github.com/evanseitz/squid-manuscript as of commit 5b47a7d), with the addition that all intermediate and final outputs are provided here.</p>
Quantitative results of the analysis of human bioengineered tissues corresponding to the work "Development of novel squid gladius biomaterials for cornea tissue engineering"
<p>This dataset corresponds to the quantitative data generated in the work entitled "Development of novel squid gladius biomaterials for cornea tissue engineering".</p> <p>Cornea tissue engineering is strictly dependent on the development of biomaterials fulfilling the strict biocompatibility, biomechanical and optical requirements of this organ. In this work, we have generated novel biomaterials from the squid gladius (SG) and their application in cornea tissue engineering was evaluated. Results revealed that the native SG (N-SG) was biocompatible in laboratory animals, although a local inflammatory reaction was driven by the material. Cellularized biomaterials (C-SG) demonstrated that the SG provides an adequate substrate for cell attachment and growth, and corneal epithelial cells cultured on this biomaterial were able to express crystallin alpha, a marker for this type of cells. Biomechanical analyses showed that N-SG biomaterials have higher Young modulus and lower traction deformation than control native corneas (CTR), and C-SG showed similar Young modulus than CTR. Analysis of the optical properties of these samples revealed that the diffuse transmittance of N-SG and C-SG were higher than CTR, with the diffuse reflectance showing the opposite behavior. These results confirm the putative usefulness of this abundant marine-derived biomaterial that can be obtained as a byproduct of the fishing industry.</p>
Figure 2 in Observations of multiple pelagic egg masses from small-sized jumbo squid (Dosidicus gigas) in the Gulf of California
Figure 2. (a) Distribution of ommastrephid egg mass diameters. Dosidicus gigas (small) are from the present study. Dosidicus gigas (large) is from Staaf et al. (2008). Illex illecebrosus are from Durward et al. (1980) and O'Dor and Balch (1985). Nototodarus gouldi are from O'Shea et al. (2004). Todarodes pacificus are from Bower and Sakurai (1996) and Puneeta et al. (2015). (b) 80-cm egg mass (30 May #1). (c) 122-cm egg mass (29 May #2).
Figure 10 in Ontogeny of the deep-sea cranchiid squid Teuthowenia pellucida (Cephalopoda: Cranchiidae) from New Zealand waters
Figure 10. Development of fin shape between juvenile and sub-adult stages (stages E and F) of Teuthowenia pellucida. Specimen maturation from left to right.
Figure 8 in Ontogeny of the deep-sea cranchiid squid Teuthowenia pellucida (Cephalopoda: Cranchiidae) from New Zealand waters
Figure 8. Arm modifications in adult Teuthowenia pellucida. Brachial end organ (A) on the tips of all arms in mature females; (B) four series of small suckers on the distal tip of arms I and II in adult males. Scale bar = 1 cm.
Figure 6 in Ontogeny of the deep-sea cranchiid squid Teuthowenia pellucida (Cephalopoda: Cranchiidae) from New Zealand waters
Figure 6. Simplified diagram of eye photophores and lens from (A) anterior view and (B) ventral side of the eye in adult Teuthowenia pellucida.
Figure 4 in Ontogeny of the deep-sea cranchiid squid Teuthowenia pellucida (Cephalopoda: Cranchiidae) from New Zealand waters
Figure 4. Schematic diagram of Teuthowenia pellucida tentacle showing paired zig-zag sucker pattern on stalk, visible from Stage D onwards.
Figure 2 in Ontogeny of the deep-sea cranchiid squid Teuthowenia pellucida (Cephalopoda: Cranchiidae) from New Zealand waters
Figure 2. Development of Teuthowenia pellucida eyes through ontogeny showing both anterior (right) and lateral (left) perspective. Eye presented from (A) stage A; (B) stage B; (C) stage C; (D) stage D; (E) stage E and F; (F) adult (anterior); (G) adult (ventral). Scale bar = 1 mm.
Figure 12 in Ontogeny of the deep-sea cranchiid squid Teuthowenia pellucida (Cephalopoda: Cranchiidae) from New Zealand waters
Figure 12. Difference in visible rachis shape at anterior dorsal midline of (A) Teuthowenia; (B) Megalocranchia; (C) Liguriella (ML range: 17–29 mm).
Figure 3 in Observations on age and reproduction of the oceanic squid Ancistrocheirus lesueurii (d'Orbigny, 1842) (Cephalopoda: Ancistrocheiridae)
Figure 3. Ancistrocheirus lesueurii. (A) Statolith section of a mature intersexual male (ML 275 mm) in which 761 increments could be counted. The areas in boxes are enlarged in B, C and D, where B is the nucleus, C shows regular increments past the mid part of the rostrum and D shows the increments in the periphery of the rostrum.
Figure 12. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 12. Amutatiola macroventosa n. gen. & n. sp.: a, spermatophore, holotype (MOV F80081) Spermatophore length, 3.55 mm (insets: i, close-up of oral cap; ii, close-up of cement body); b, Bursa copulatrix, paratype 1 (MOV F275293; black scale: 1 mm/division) (lflc: left funnel locking cartilage; lg: left gill); arrow points to the bursa copulatrix entrance.
Figure 2. Dextrasepiola taenia n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 2. Dextrasepiola taenia n. gen. & n. sp., female, paratype 1 (MOV F91359): a, dorsal view; b, ventral view; c, oral view of arm crown showing sucker arrangements of female.
Figure 5. Dextrasepiola taenia n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 5. Dextrasepiola taenia n. gen. & n. sp. (grids in background: 1 mm × 1 mm): a, spermatophore from the holotype (MOV F80458); b, close-up of cement body; c, bursa copulatrix, paratype 1 (MOV F31359; bc: bursa copulatrix; rg: right gill; rsf: right side of funnel); d, bursa copulatrix, juvenile (MOV F31360; bc: bursa copulatrix; lflc: left funnel locking cartilage; rflc: right funnel locking cartilage; rg: right gill); e, bursa copulatrix, paratype 3 (MOV F31361; bc: bursa copulatrix; lsf: left side of funnel; ms: mantle septum; rsf: right side of funnel); f, close-up of a portion of e, arrow points to opening of bursa copulatrix.
Figure 9. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 9. Amutatiola macroventosa n. gen. & n. sp. male, paratype 5 (MOV F158244). Oral views of arms (grids in background: 1 mm × 1 mm): a, right arm I; b, right arm II; c, right arm III; d, right arm IV; e, left arm I; f, left arm II; g, left arm III; h, left arm IV.
Figure 11. Amutatiola macroventosa n.gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 11. Amutatiola macroventosa n.gen. & n.sp. (grids in background: 1 mm × 1 mm): a, right tentacular club, male, paratype 5 (MOV F158244); b, photophores (p), male, paratype 5 (MOV F158244); c, lateral view of upper beak, female, paratype 1 (MOV F275293); d, lateral view of lower beak, female, paratype 1 (MOV F275293); e, top view of lower beak, female, paratype 1 (MOV F275293); f, radula, female, paratype 1 (MOV F275293).
Figure 10. Amutatiola macroventosa n. gen. & n in Two new genera and species of sepioline squids (Cephalopoda: Sepiolidae) from Australia
Figure 10. Amutatiola macroventosa n. gen. & n. sp. Sucker ring dentition (grids in background: 1 mm × 1 mm): a, left arm IV of male, paratype 5 (F158244) showing normal (non-enlarged) suckers near arm tip; b, right arm III of male, paratype 5 (F158244) showing sucker ring of enlarged suckers; c, d, normal sucker of left arm II of male, paratype 5 (F158244); e, left arm I of male, paratype 5 (F158244) showing enlarged suckers; f, an enlarged sucker of e showing sucker ring; g, dorsal view of female (F275296) showing non-enlargement of suckers; h, ventral view of female (F275296) showing non-enlargement of suckers; i, arm crown of female (F275296) showing non-enlargement of suckers; j, close-up of a portion of an arm of i showing sucker ring dentition.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.